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Imaging, image analysis and data visualization

This section incorporates all aspects of imaging and bioimage informatics, including but not limited to: microscopic and biomedical image acquisition methods and applications, methods and applications of image analysis and related machine learning, pattern recognition and data mining techniques, image oriented multidimensional data and metadata visualization techniques, methods and applications of bioimage annotation and ontology generation.

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1.

Research article   Open Access

A novel application of motion analysis for detecting stress responses in embryos at different stages of development

Oliver Tills, Tabitha Bitterli, Phil Culverhouse, John I Spicer, Simon Rundle BMC Bioinformatics 2013, 14:37 (1 February 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

2.

Software   Open Access Highly Accessed

TeraStitcher - A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images

Alessandro Bria, Giulio Iannello BMC Bioinformatics 2012, 13:316 (27 November 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

TeraStitcher, a freely available tool, permits retrieval and processing of images generated using approximate tile positions to stitch Teravoxel-sized tiled microscopy images from large amounts of data even on memory limited machines.

3.

Methodology article   Open Access

Quantitative fluorescence loss in photobleaching for analysis of protein transport and aggregation

Daniel Wüstner, Lukasz M Solanko, Frederik W Lund, Daniel Sage, Hans J Schroll, Michael A Lomholt BMC Bioinformatics 2012, 13:296 (13 November 2012)

Abstract | Full text | PDF | PubMed

4.

Research article   Open Access

Cascaded discrimination of normal, abnormal, and confounder classes in histopathology: Gleason grading of prostate cancer

Scott Doyle, Michael D Feldman, Natalie Shih, John Tomaszewski, Anant Madabhushi BMC Bioinformatics 2012, 13:282 (30 October 2012)

Abstract | Full text | PDF | PubMed

5.

Software   Open Access

QUAliFiER: An automated pipeline for quality assessment of gated flow cytometry data

Greg Finak, Wenxin Jiang, Jorge Pardo, Adam Asare, Raphael Gottardo BMC Bioinformatics 2012, 13:252 (28 September 2012)

Abstract | Full text | PDF | PubMed

6.

Research article   Open Access

Ranked retrieval of segmented nuclei for objective assessment of cancer gene repositioning

William J Cukierski, Kaustav Nandy, Prabhakar Gudla, Karen J Meaburn, Tom Misteli, David J Foran, Stephen J Lockett BMC Bioinformatics 2012, 13:232 (12 September 2012)

Abstract | Full text | PDF | PubMed

7.

Methodology article   Open Access

Sampling issues in quantitative analysis of dendritic spines morphology

Błażej Ruszczycki, Zsuzsanna Szepesi, Grzegorz M Wilczynski, Monika Bijata, Katarzyna Kalita, Leszek Kaczmarek, Jakub Wlodarczyk BMC Bioinformatics 2012, 13:213 (25 August 2012)

Abstract | Full text | PDF | PubMed

8.

Research article   Open Access

An image classification approach to analyze the suppression of plant immunity by the human pathogen Salmonella Typhimurium

Marek Schikora, Balram Neupane, Satish Madhogaria, Wolfgang Koch, Daniel Cremers, Heribert Hirt, Karl-Heinz Kogel, Adam Schikora BMC Bioinformatics 2012, 13:171 (19 July 2012)

Abstract | Full text | PDF | PubMed

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