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Imaging, image analysis and data visualization Section edited by Hanchuan Peng

This section incorporates all aspects of imaging and bioimage informatics, including but not limited to: microscopic and biomedical image acquisition methods and applications, methods and applications of image analysis and related machine learning, pattern recognition and data mining techniques, image oriented multidimensional data and metadata visualization techniques, methods and applications of bioimage annotation and ontology generation.

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1.

Software   Open Access Highly Accessed

WholeCellViz: data visualization for whole-cell models

Ruby Lee, Jonathan R Karr, Markus W Covert BMC Bioinformatics 2013, 14:253 (21 August 2013)

Abstract | Full text | PDF | ePUB | PubMed

2.

Research article   Open Access Highly Accessed

Surface feature based classification of plant organs from 3D laserscanned point clouds for plant phenotyping

Stefan Paulus, Jan Dupuis, Anne-Katrin Mahlein, Heiner Kuhlmann BMC Bioinformatics 2013, 14:238 (27 July 2013)

Abstract | Full text | PDF | ePUB | PubMed

3.

Methodology article   Open Access Highly Accessed

Automatic landmark annotation and dense correspondence registration for 3D human facial images

Jianya Guo, Xi Mei, Kun Tang BMC Bioinformatics 2013, 14:232 (22 July 2013)

Abstract | Full text | PDF | ePUB | PubMed

4.

Research article   Open Access Highly Accessed

Computational genetic neuroanatomy of the developing mouse brain: dimensionality reduction, visualization, and clustering

Shuiwang Ji BMC Bioinformatics 2013, 14:222 (11 July 2013)

Abstract | Full text | PDF | ePUB | PubMed

5.

Software   Open Access Highly Accessed

Gel2DE - A software tool for correlation analysis of 2D gel electrophoresis data

Ola Øye, Katarina M Jørgensen, Sigrun M Hjelle, André Sulen, Dag Ulvang, Bjørn Gjertsen BMC Bioinformatics 2013, 14:215 (6 July 2013)

Abstract | Full text | PDF | ePUB | PubMed

6.

Software   Open Access Highly Accessed

bioWeb3D: an online webGL 3D data visualisation tool

Jean-Baptiste Pettit, John C Marioni BMC Bioinformatics 2013, 14:185 (7 June 2013)

Abstract | Full text | PDF | ePUB | PubMed

7.

Research article   Open Access

Region-based progressive localization of cell nuclei in microscopic images with data adaptive modeling

Yang Song, Weidong Cai, Heng Huang, Yue Wang, David Feng, Mei Chen BMC Bioinformatics 2013, 14:173 (2 June 2013)

Abstract | Full text | PDF | ePUB | PubMed

8.

Methodology article   Open Access Highly Accessed

Calcium (Ca2+) waves data calibration and analysis using image processing techniques

Carlos Milovic, Carolina Oses, Manuel Villalón, Sergio Uribe, Carlos Lizama, Claudia Prieto, Marcelo E Andia, Pablo Irarrazaval, Cristian Tejos BMC Bioinformatics 2013, 14:162 (16 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

9.

Research article   Open Access Highly Accessed

Real-time interactive data mining for chemical imaging information: application to automated histopathology

David Mayerich, Michael Walsh, Matthew Schulmerich, Rohit Bhargava BMC Bioinformatics 2013, 14:156 (8 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

10.

Methodology article   Open Access

Bacterial cell identification in differential interference contrast microscopy images

Boguslaw Obara, Mark AJ Roberts, Judith P Armitage, Vicente Grau BMC Bioinformatics 2013, 14:134 (23 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

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