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Comparative genomics Section edited by Graziano Pesole

This section incorporates all aspects of comparative genomic analysis including but not limited to: methods and applications for the analysis of comparative phylogenetic and genomic data.

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1.

Software   Open Access

SynTView — an interactive multi-view genome browser for next-generation comparative microorganism genomics

Pierre Lechat, Erika Souche, Ivan Moszer BMC Bioinformatics 2013, 14:277 (22 September 2013)

Abstract | Full text | PDF | PubMed

2.

Research article   Open Access Highly Accessed

GRank: a middleware search engine for ranking genes by relevance to given genes

Kamal Taha, Dirar Homouz, Hassan Al Muhairi, Zaid Al Mahmoud BMC Bioinformatics 2013, 14:251 (19 August 2013)

Abstract | Full text | PDF | ePUB | PubMed

3.

Software   Open Access Highly Accessed

ArkMAP: integrating genomic maps across species and data sources

Trevor Paterson, Andy Law BMC Bioinformatics 2013, 14:246 (13 August 2013)

Abstract | Full text | PDF | ePUB | PubMed

4.

Software   Open Access Highly Accessed

GenPhyloData: realistic simulation of gene family evolution

Joel Sjöstrand, Lars Arvestad, Jens Lagergren, Bengt Sennblad BMC Bioinformatics 2013, 14:209 (27 June 2013)

Abstract | Full text | PDF | ePUB | PubMed

5.

Methodology article   Open Access Highly Accessed

Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline

Alireza Hadj Khodabakhshi, Anthony P Fejes, Inanc Birol, Steven JM Jones BMC Bioinformatics 2013, 14:167 (28 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

6.

Software   Open Access Highly Accessed

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient

Arlin Stoltzfus, Hilmar Lapp, Naim Matasci, Helena Deus, Brian Sidlauskas, Christian M Zmasek, Gaurav Vaidya, Enrico Pontelli, Karen Cranston, Rutger Vos, Campbell O Webb, Luke J Harmon, Megan Pirrung, Brian O'Meara, Matthew W Pennell, Siavash Mirarab, Michael S Rosenberg, James P Balhoff, Holly M Bik, Tracy A Heath, Peter E Midford, Joseph W Brown, Emily Jane McTavish, Jeet Sukumaran, Mark Westneat, Michael E Alfaro, Aaron Steele, Greg Jordan BMC Bioinformatics 2013, 14:158 (13 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

7.

Methodology article   Open Access Highly Accessed

Analysis of multiple phenotypes in genome-wide genetic mapping studies

Chen Suo, Timothea Toulopoulou, Elvira Bramon, Muriel Walshe, Marco Picchioni, Robin Murray, Jurg Ott BMC Bioinformatics 2013, 14:151 (2 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

8.

Research article   Open Access

Quantifying variances in comparative RNA secondary structure prediction

James WJ Anderson, Ádám Novák, Zsuzsanna Sükösd, Michael Golden, Preeti Arunapuram, Ingolfur Edvardsson, Jotun Hein BMC Bioinformatics 2013, 14:149 (1 May 2013)

Abstract | Full text | PDF | ePUB | PubMed

9.

Software   Open Access Highly Accessed

An automated graphics tool for comparative genomics: the Coulson plot generator

Helen I Field, Richard MR Coulson, Mark C Field BMC Bioinformatics 2013, 14:141 (27 April 2013)

Abstract | Full text | PDF | ePUB | PubMed

10.

Software   Open Access Highly Accessed

TPMS: a set of utilities for querying collections of gene trees

Thomas Bigot, Vincent Daubin, Florent Lassalle, Guy Perrière BMC Bioinformatics 2013, 14:109 (27 March 2013)

Abstract | Full text | PDF | ePUB | PubMed

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