BMC Bioinformatics | Most Forwarded

1.

Mistaken Identifiers: Gene name errors can be introduced inadvertently when using Excel in bioinformatics

Barry R Zeeberg, Joseph Riss, David W Kane, Kimberly J Bussey, Edward Uchio, W Marston Linehan, J Carl Barrett, John N Weinstein BMC Bioinformatics 2004, 5:80 (23 June 2004)

2.

Survey-based naming conventions for use in OBO Foundry ontology development

Daniel Schober, Barry Smith, Suzanna E Lewis, Waclaw Kusnierczyk, Jane Lomax, Chris Mungall, Chris F Taylor, Philippe Rocca-Serra, Susanna-Assunta Sansone BMC Bioinformatics 2009, 10:125 (27 April 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

3.

Binding Site Prediction for Protein-Protein Interactions and Novel Motif Discovery using Re-occurring Polypeptide Sequences

Adam Amos-Binks, Catalin Patulea, Sylvain Pitre, Andrew Schoenrock, Yuan Gui, James R Green, Ashkan Golshani, Frank Dehne BMC Bioinformatics 2011, 12:225 (2 June 2011)

Abstract | Full text | PDF | PubMed

4.

Top scoring pairs for feature selection in machine learning and applications to cancer outcome prediction

Ping Shi, Surajit Ray, Qifu Zhu, Mark A Kon BMC Bioinformatics 2011, 12:375 (23 September 2011)

Abstract | Full text | PDF | PubMed

5.

Bioinformatics resource manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools

Susan C Tilton, Tamara L Tal, Sheena M Scroggins, Jill A Franzosa, Elena S Peterson, Robert L Tanguay, Katrina M Waters BMC Bioinformatics 2012, 13:311 (23 November 2012)

Abstract | Full text | PDF | PubMed

6.

PlanktoVision – an automated analysis system for the identification of phytoplankton

Katja Schulze, Ulrich M Tillich, Thomas Dandekar, Marcus Frohme BMC Bioinformatics 2013, 14:115 (27 March 2013)

Abstract | Full text | PDF | ePUB | PubMed

7.

Ensemble-based prediction of RNA secondary structures

Nima Aghaeepour, Holger H Hoos BMC Bioinformatics 2013, 14:139 (24 April 2013)

Abstract | Provisional PDF | PubMed

8.

Incorporating phylogenetic-based covarying mutations into RNAalifold for RNA consensus structure prediction

Ping Ge, Shaojie Zhang BMC Bioinformatics 2013, 14:142 (27 April 2013)

Abstract | Provisional PDF | PubMed

9.

Quality control, analysis and secure sharing of Luminex(R) immunoassay data using the open source LabKey Server platform

Josh Eckels, Cory Nathe, Elizabeth K Nelson, Sara G Shoemaker, Elizabeth Nostrand, Nicole L Yates, Vicki C Ashley, Linda J Harris, Mark Bollenbeck, Youyi Fong, Georgia D Tomaras, Britt Piehler BMC Bioinformatics 2013, 14:145 (30 April 2013)

Abstract | Provisional PDF | PubMed

10.

Quantifying variances in comparative RNA secondary structure prediction

James WJ Anderson, Ádám Novák, Zsuzsanna Sükösd, Michael Golden, Preeti Arunapuram, Ingolfur Edvardsson, Jotun Hein BMC Bioinformatics 2013, 14:149 (1 May 2013)

Abstract | Provisional PDF | PubMed

11.

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient

Arlin Stoltzfus, Hilmar Lapp, Naim Matasci, Helena Deus, Brian Sidlauskas, Christian M Zmasek, Gaurav Vaidya, Enrico Pontelli, Karen Cranston, Rutger Vos, Campbell O Webb, Luke J Harmon, Megan Pirrung, Brian O'Meara, Matthew W Pennell, Siavash Mirarab, Michael S Rosenberg, James P Balhoff, Holly M Bik, Tracy A Heath, Peter E Midford, Joseph W Brown, Emily Jane McTavish, Jeet Sukumaran, Mark Westneat, Michael E Alfaro, Aaron Steele, Greg Jordan BMC Bioinformatics 2013, 14:158 (13 May 2013)

Abstract | Provisional PDF | PubMed

12.

Protein complex detection using interaction reliability assessment and weighted clustering coefficient

Nazar Zaki, Dmitry Efimov, Jose Berengueres BMC Bioinformatics 2013, 14:163 (20 May 2013)

Abstract | Provisional PDF

13.

Age-adjusted nonparametric detection of differential DNA methylation with case–control designs

Hanwen Huang, Zhongxue Chen, Xudong Huang BMC Bioinformatics 2013, 14:86 (6 March 2013)

Abstract | Full text | PDF | PubMed

14.

Bioinformatics analysis of the epitope regions for norovirus capsid protein

Liping Chen, Di Wu, Lei Ji, Xiaofang Wu, Deshun Xu, Zhiwei Cao, Jiankang Han BMC Bioinformatics 2013, 14(Suppl 4):S5 (8 March 2013)

Abstract | Full text | PDF | PubMed

15.

UbiProt: a database of ubiquitylated proteins

Alexander L Chernorudskiy, Alejandro Garcia, Eugene V Eremin, Anastasia S Shorina, Ekaterina V Kondratieva, Murat R Gainullin BMC Bioinformatics 2007, 8:126 (18 April 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

16.

Baseline Correction for NMR Spectroscopic Metabolomics Data Analysis

Yuanxin Xi, David M Rocke BMC Bioinformatics 2008, 9:324 (29 July 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

	All
	1.	Correspondence Mistaken Identifiers: Gene name errors can be introduced inadvertently when using Excel in bioinformatics Barry R Zeeberg, Joseph Riss, David W Kane, Kimberly J Bussey, Edward Uchio, W Marston Linehan, J Carl Barrett, John N Weinstein BMC Bioinformatics 2004, 5:80 (23 June 2004) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 7 comments
	2.	Correspondence Survey-based naming conventions for use in OBO Foundry ontology development Daniel Schober, Barry Smith, Suzanna E Lewis, Waclaw Kusnierczyk, Jane Lomax, Chris Mungall, Chris F Taylor, Philippe Rocca-Serra, Susanna-Assunta Sansone BMC Bioinformatics 2009, 10:125 (27 April 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	3.	Methodology article Binding Site Prediction for Protein-Protein Interactions and Novel Motif Discovery using Re-occurring Polypeptide Sequences Adam Amos-Binks, Catalin Patulea, Sylvain Pitre, Andrew Schoenrock, Yuan Gui, James R Green, Ashkan Golshani, Frank Dehne BMC Bioinformatics 2011, 12:225 (2 June 2011) Abstract \| Full text \| PDF \| PubMed
	4.	Research article Top scoring pairs for feature selection in machine learning and applications to cancer outcome prediction Ping Shi, Surajit Ray, Qifu Zhu, Mark A Kon BMC Bioinformatics 2011, 12:375 (23 September 2011) Abstract \| Full text \| PDF \| PubMed
	5.	Software Bioinformatics resource manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools Susan C Tilton, Tamara L Tal, Sheena M Scroggins, Jill A Franzosa, Elena S Peterson, Robert L Tanguay, Katrina M Waters BMC Bioinformatics 2012, 13:311 (23 November 2012) Abstract \| Full text \| PDF \| PubMed
	6.	Methodology article PlanktoVision – an automated analysis system for the identification of phytoplankton Katja Schulze, Ulrich M Tillich, Thomas Dandekar, Marcus Frohme BMC Bioinformatics 2013, 14:115 (27 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	7.	Methodology article Ensemble-based prediction of RNA secondary structures Nima Aghaeepour, Holger H Hoos BMC Bioinformatics 2013, 14:139 (24 April 2013) Abstract \| Provisional PDF \| PubMed
	8.	Methodology article Incorporating phylogenetic-based covarying mutations into RNAalifold for RNA consensus structure prediction Ping Ge, Shaojie Zhang BMC Bioinformatics 2013, 14:142 (27 April 2013) Abstract \| Provisional PDF \| PubMed
	9.	Software Quality control, analysis and secure sharing of Luminex(R) immunoassay data using the open source LabKey Server platform Josh Eckels, Cory Nathe, Elizabeth K Nelson, Sara G Shoemaker, Elizabeth Nostrand, Nicole L Yates, Vicki C Ashley, Linda J Harris, Mark Bollenbeck, Youyi Fong, Georgia D Tomaras, Britt Piehler BMC Bioinformatics 2013, 14:145 (30 April 2013) Abstract \| Provisional PDF \| PubMed
	10.	Research article Quantifying variances in comparative RNA secondary structure prediction James WJ Anderson, Ádám Novák, Zsuzsanna Sükösd, Michael Golden, Preeti Arunapuram, Ingolfur Edvardsson, Jotun Hein BMC Bioinformatics 2013, 14:149 (1 May 2013) Abstract \| Provisional PDF \| PubMed
	11.	Software Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient Arlin Stoltzfus, Hilmar Lapp, Naim Matasci, Helena Deus, Brian Sidlauskas, Christian M Zmasek, Gaurav Vaidya, Enrico Pontelli, Karen Cranston, Rutger Vos, Campbell O Webb, Luke J Harmon, Megan Pirrung, Brian O'Meara, Matthew W Pennell, Siavash Mirarab, Michael S Rosenberg, James P Balhoff, Holly M Bik, Tracy A Heath, Peter E Midford, Joseph W Brown, Emily Jane McTavish, Jeet Sukumaran, Mark Westneat, Michael E Alfaro, Aaron Steele, Greg Jordan BMC Bioinformatics 2013, 14:158 (13 May 2013) Abstract \| Provisional PDF \| PubMed
	12.	Research article Protein complex detection using interaction reliability assessment and weighted clustering coefficient Nazar Zaki, Dmitry Efimov, Jose Berengueres BMC Bioinformatics 2013, 14:163 (20 May 2013) Abstract \| Provisional PDF
	13.	Methodology article Age-adjusted nonparametric detection of differential DNA methylation with case–control designs Hanwen Huang, Zhongxue Chen, Xudong Huang BMC Bioinformatics 2013, 14:86 (6 March 2013) Abstract \| Full text \| PDF \| PubMed
	14.	Research Bioinformatics analysis of the epitope regions for norovirus capsid protein Liping Chen, Di Wu, Lei Ji, Xiaofang Wu, Deshun Xu, Zhiwei Cao, Jiankang Han BMC Bioinformatics 2013, 14(Suppl 4):S5 (8 March 2013) Abstract \| Full text \| PDF \| PubMed
	15.	Database UbiProt: a database of ubiquitylated proteins Alexander L Chernorudskiy, Alejandro Garcia, Eugene V Eremin, Anastasia S Shorina, Ekaterina V Kondratieva, Murat R Gainullin BMC Bioinformatics 2007, 8:126 (18 April 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	16.	Methodology article Baseline Correction for NMR Spectroscopic Metabolomics Data Analysis Yuanxin Xi, David M Rocke BMC Bioinformatics 2008, 9:324 (29 July 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central

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