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	26.	Proceedings Towards reliable isoform quantification using RNA-SEQ data Brian E Howard, Steffen Heber BMC Bioinformatics 2010, 11(Suppl 3):S6 (29 April 2010) Abstract \| Full text \| PDF \| PubMed
	27.	Software PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens Sreedevi Thiyagarajan, Miloslav Karhanek, Michael Akhras, Ronald W Davis, Nader Pourmand BMC Bioinformatics 2006, 7:500 (14 November 2006) Abstract \| Full text \| PDF \| PubMed
	28.	Software PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods Alexandre P Francisco, Cátia Vaz, Pedro T Monteiro, José Melo-Cristino, Mário Ramirez, João A Carriço BMC Bioinformatics 2012, 13:87 (8 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Phyloviz is an exciting free software for visualizing genotype datasets, isolating populations for epidemiological analysis, vizualising potential evolutionary relationships between bacteria and providing access to publicly available data plus potential to export high resolution images.
	29.	Database PMTED: a plant microRNA target expression database Xiuli Sun, Boquan Dong, Lingjie Yin, Rongzhi Zhang, Wei Du, Dongfeng Liu, Nan Shi, Aili Li, Yanchun Liang, Long Mao BMC Bioinformatics 2013, 14:174 (3 June 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	30.	Correspondence Quantification of the variation in percentage identity for protein sequence alignments GPS Raghava, Geoffrey J Barton BMC Bioinformatics 2006, 7:415 (19 September 2006) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	31.	Software BISMA - Fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences Christian Rohde, Yingying Zhang, Richard Reinhardt, Albert Jeltsch BMC Bioinformatics 2010, 11:230 (6 May 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	32.	Research article Tissue-based Alzheimer gene expression markers–comparison of multiple machine learning approaches and investigation of redundancy in small biomarker sets Lena Scheubert, Mitja Luštrek, Rainer Schmidt, Dirk Repsilber, Georg Fuellen BMC Bioinformatics 2012, 13:266 (15 October 2012) Abstract \| Full text \| PDF \| PubMed
	33.	Proceedings Systematic identification of functional modules and cis-regulatory elements in Arabidopsis thaliana Jianhua Ruan, Joseph Perez, Brian Hernandez, Chengwei Lei, Garry Sunter, Valerie M Sponsel BMC Bioinformatics 2011, 12(Suppl 12):S2 (24 November 2011) Abstract \| Full text \| PDF \| PubMed
	34.	Research article GalaxyTBM: template-based modeling by building a reliable core and refining unreliable local regions Junsu Ko, Hahnbeom Park, Chaok Seok BMC Bioinformatics 2012, 13:198 (10 August 2012) Abstract \| Full text \| PDF \| PubMed
	35.	Database VKCDB: Voltage-gated potassium channel database Bin Li, Warren J Gallin BMC Bioinformatics 2004, 5:3 (9 January 2004) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	36.	Methodology article Copy Number Variation detection from 1000 Genomes project exon capture sequencing data Jiantao Wu, Krzysztof R Grzeda, Chip Stewart, Fabian Grubert, Alexander E Urban, Michael P Snyder, Gabor T Marth BMC Bioinformatics 2012, 13:305 (17 November 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	37.	Methodology article Statistical and visual differentiation of subcellular imaging Nicholas A Hamilton, Jack TH Wang, Markus C Kerr, Rohan D Teasdale BMC Bioinformatics 2009, 10:94 (22 March 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	38.	Research article Human-specific protein isoforms produced by novel splice sites in the human genome after the human-chimpanzee divergence Dong Seon Kim, Yoonsoo Hahn BMC Bioinformatics 2012, 13:299 (13 November 2012) Abstract \| Full text \| PDF \| PubMed
	39.	Research article Prognostic gene signatures for patient stratification in breast cancer - accuracy, stability and interpretability of gene selection approaches using prior knowledge on protein-protein interactions Yupeng Cun, Holger Fröhlich BMC Bioinformatics 2012, 13:69 (1 May 2012) Abstract \| Full text \| PDF \| PubMed
	40.	Research article Top scoring pairs for feature selection in machine learning and applications to cancer outcome prediction Ping Shi, Surajit Ray, Qifu Zhu, Mark A Kon BMC Bioinformatics 2011, 12:375 (23 September 2011) Abstract \| Full text \| PDF \| PubMed
	41.	Software Extending the BEAGLE library to a multi-FPGA platform Zheming Jin, Jason D Bakos BMC Bioinformatics 2013, 14:25 (19 January 2013) Abstract \| Full text \| PDF \| PubMed
	42.	Proceedings Efficient path-based computations on pedigree graphs with compact encodings Lei Yang, En Cheng, Z Meral Özsoyoğlu BMC Bioinformatics 2012, 13(Suppl 3):S14 (21 March 2012) Abstract \| Full text \| PDF \| PubMed
	43.	Methodology article Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes Patrick Warnat, Roland Eils, Benedikt Brors BMC Bioinformatics 2005, 6:265 (4 November 2005) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	44.	Software BioWord: A sequence manipulation suite for Microsoft Word Laura J Anzaldi, Daniel Muñoz-Fernández, Ivan Erill BMC Bioinformatics 2012, 13:124 (7 June 2012) Abstract \| Full text \| PDF \| PubMed
	45.	Proceedings SNP@Promoter: a database of human SNPs (Single Nucleotide Polymorphisms) within the putative promoter regions Byoung-Chul Kim, Woo-Yeon Kim, Daeui Park, Won-Hyong Chung, Kwang-sik Shin, Jong Bhak BMC Bioinformatics 2008, 9(Suppl 1):S2 (13 February 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	46.	Research article An image classification approach to analyze the suppression of plant immunity by the human pathogen Salmonella Typhimurium Marek Schikora, Balram Neupane, Satish Madhogaria, Wolfgang Koch, Daniel Cremers, Heribert Hirt, Karl-Heinz Kogel, Adam Schikora BMC Bioinformatics 2012, 13:171 (19 July 2012) Abstract \| Full text \| PDF \| PubMed
	47.	Methodology article A novel hierarchical clustering algorithm for gene sequences Dan Wei, Qingshan Jiang, Yanjie Wei, Shengrui Wang BMC Bioinformatics 2012, 13:174 (23 July 2012) Abstract \| Full text \| PDF \| PubMed
	48.	Software Automics: an integrated platform for NMR-based metabonomics spectral processing and data analysis Tao Wang, Kang Shao, Qinying Chu, Yanfei Ren, Yiming Mu, Lijia Qu, Jie He, Changwen Jin, Bin Xia BMC Bioinformatics 2009, 10:83 (16 March 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary 'Automics' is a new open-source software package for integrated spectral processing and analysis of nuclear magnetic resonance-based metabonomic datasets, which would otherwise require the use of several separate programs.
	49.	Research Classification of protein sequences by means of irredundant patterns Matteo Comin, Davide Verzotto BMC Bioinformatics 2010, 11(Suppl 1):S16 (18 January 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	50.	Research article Optimization of de novo transcriptome assembly from high-throughput short read sequencing data improves functional annotation for non-model organisms Berat Z Haznedaroglu, Darryl Reeves, Hamid Rismani-Yazdi, Jordan Peccia BMC Bioinformatics 2012, 13:170 (18 July 2012) Abstract \| Full text \| PDF \| PubMed