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	1.	Methodology article Readjoiner: a fast and memory efficient string graph-based sequence assembler Giorgio Gonnella, Stefan Kurtz BMC Bioinformatics 2012, 13:82 (6 May 2012) Abstract \| Full text \| PDF \| PubMed
	2.	Methodology article Cloud computing for comparative genomics Dennis P Wall, Parul Kudtarkar, Vincent A Fusaro, Rimma Pivovarov, Prasad Patil, Peter J Tonellato BMC Bioinformatics 2010, 11:259 (18 May 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	3.	Software PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods Alexandre P Francisco, Cátia Vaz, Pedro T Monteiro, José Melo-Cristino, Mário Ramirez, João A Carriço BMC Bioinformatics 2012, 13:87 (8 May 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Phyloviz is an exciting free software for visualizing genotype datasets, isolating populations for epidemiological analysis, vizualising potential evolutionary relationships between bacteria and providing access to publicly available data plus potential to export high resolution images.
	4.	Research article A comparative evaluation of sequence classification programs Adam L Bazinet, Michael P Cummings BMC Bioinformatics 2012, 13:92 (10 May 2012) Abstract \| Full text \| PDF \| PubMed \| F1000 Biology
	5.	Research article Merging microarray data from separate breast cancer studies provides a robust prognostic test Lei Xu, Aik Tan, Raimond L Winslow, Donald Geman BMC Bioinformatics 2008, 9:125 (27 February 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	6.	Research article BioCause: Annotating and analysing causality in the biomedical domain Claudiu Mihăilă, Tomoko Ohta, Sampo Pyysalo, Sophia Ananiadou BMC Bioinformatics 2013, 14:2 (16 January 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	7.	Software virtualArray: a R/bioconductor package to merge raw data from different microarray platforms Andreas Heider, Rüdiger Alt BMC Bioinformatics 2013, 14:75 (2 March 2013) Abstract \| Full text \| PDF \| PubMed
	8.	Methodology article Identifying structural domains of proteins using clustering Howard J Feldman BMC Bioinformatics 2012, 13:286 (1 November 2012) Abstract \| Full text \| PDF \| PubMed
	9.	Review Current approaches to gene regulatory network modelling Thomas Schlitt, Alvis Brazma BMC Bioinformatics 2007, 8(Suppl 6):S9 (27 September 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	10.	Correspondence Mistaken Identifiers: Gene name errors can be introduced inadvertently when using Excel in bioinformatics Barry R Zeeberg, Joseph Riss, David W Kane, Kimberly J Bussey, Edward Uchio, W Marston Linehan, J Carl Barrett, John N Weinstein BMC Bioinformatics 2004, 5:80 (23 June 2004) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 7 comments
	11.	Methodology article PlanktoVision – an automated analysis system for the identification of phytoplankton Katja Schulze, Ulrich M Tillich, Thomas Dandekar, Marcus Frohme BMC Bioinformatics 2013, 14:115 (27 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	12.	Research EVA: Exome Variation Analyzer, an efficient and versatile tool for filtering strategies in medical genomics Sophie Coutant, Chloé Cabot, Arnaud Lefebvre, Martine Léonard, Elise Prieur-Gaston, Dominique Campion, Thierry Lecroq, Hélène Dauchel BMC Bioinformatics 2012, 13(Suppl 14):S9 (7 September 2012) Abstract \| Full text \| PDF \| PubMed
	13.	Database T3DB: an integrated database for bacterial type III secretion system Yejun Wang, He Huang, Ming’an Sun, Qing Zhang, Dianjing Guo BMC Bioinformatics 2012, 13:66 (30 April 2012) Abstract \| Full text \| PDF \| PubMed
	14.	Research article Phamerator: a bioinformatic tool for comparative bacteriophage genomics Steven G Cresawn, Matt Bogel, Nathan Day, Deborah Jacobs-Sera, Roger W Hendrix, Graham F Hatfull BMC Bioinformatics 2011, 12:395 (12 October 2011) Abstract \| Full text \| PDF \| PubMed
	15.	Methodology article A new real-time PCR method to overcome significant quantitative inaccuracy due to slight amplification inhibition Michele Guescini, Davide Sisti, Marco BL Rocchi, Laura Stocchi, Vilberto Stocchi BMC Bioinformatics 2008, 9:326 (30 July 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	16.	Research CMKb: a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge Jitendra Gaikwad, Varun Khanna, Subramanyam Vemulpad, Joanne Jamie, Jim Kohen, Shoba Ranganathan BMC Bioinformatics 2008, 9(Suppl 12):S25 (12 December 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	17.	Methodology article Statistical significance of quantitative PCR Yann Karlen, Alan McNair, Sébastien Perseguers, Christian Mazza, Nicolas Mermod BMC Bioinformatics 2007, 8:131 (20 April 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	18.	Methodology article Surprising results on phylogenetic tree building methods based on molecular sequences Gaston H Gonnet BMC Bioinformatics 2012, 13:148 (27 June 2012) Abstract \| Full text \| PDF \| PubMed
	19.	Methodology article Coupled mutation finder: A new entropy-based method quantifying phylogenetic noise for the detection of compensatory mutations Mehmet Gültas, Martin Haubrock, Nesrin Tüysüz, Stephan Waack BMC Bioinformatics 2012, 13:225 (11 September 2012) Abstract \| Full text \| PDF \| PubMed
	20.	Software Coral: an integrated suite of visualizations for comparing clusterings Darya Filippova, Aashish Gadani, Carl Kingsford BMC Bioinformatics 2012, 13:276 (29 October 2012) Abstract \| Full text \| PDF \| PubMed
	21.	Research article Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computer Pierre Peterlongo, Rayan Chikhi BMC Bioinformatics 2012, 13:48 (23 March 2012) Abstract \| Full text \| PDF \| PubMed \| 1 comment \| Editor’s summary Mapsembler, a sequence assembly tool for desktop computers, uses NGS reads from newly sequenced, non-assembled genomes or transcriptomes to provide targeted assemblies and has retrieved known gene fusions in human cancer and discovered new ones
	22.	Methodology article Arrow plot: a new graphical tool for selecting up and down regulated genes and genes differentially expressed on sample subgroups Carina Silva-Fortes, Maria Amaral Turkman, Lisete Sousa BMC Bioinformatics 2012, 13:147 (26 June 2012) Abstract \| Full text \| PDF \| PubMed
	23.	Software CGAP: a new comprehensive platform for the comparative analysis of chloroplast genomes Jinkui Cheng, Xu Zeng, Guomin Ren, Zhihua Liu BMC Bioinformatics 2013, 14:95 (14 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	24.	Research article Disentangling evolutionary signals: conservation, specificity determining positions and coevolution. Implication for catalytic residue prediction Elin Teppa, Angela D Wilkins, Morten Nielsen, Cristina Buslje BMC Bioinformatics 2012, 13:235 (14 September 2012) Abstract \| Full text \| PDF \| PubMed
	25.	Methodology article Molecular ecological network analyses Ye Deng, Yi-Huei Jiang, Yunfeng Yang, Zhili He, Feng Luo, Jizhong Zhou BMC Bioinformatics 2012, 13:113 (30 May 2012) Abstract \| Full text \| PDF \| PubMed