|
|
|
|
|
1.
|
Scratchpads: a data-publishing framework to build, share and manage information on the diversity of life
Vincent S Smith, Simon D Rycroft, Kehan T Harman, Ben Scott, David Roberts BMC Bioinformatics 2009, 10(Suppl 14):S6 (10 November 2009)
Abstract | Full text | PDF
| PubMed
|
Editor’s summary
Scratchpads, a new social networking tool for natural history researchers and enthusiasts, links information from disparate sources, encourages data sharing, and promotes the ultimate goal of describing and synthesising all facets of the diversity of life.
|
|
|
2.
|
Multiple consensus trees: a method to separate divergent genes
Alain Guenoche BMC Bioinformatics 2013, 14:46 (9 February 2013)
Abstract | Provisional PDF
| PubMed
|
|
|
3.
|
A novel method for cross-species gene expression analysis
Erik Kristiansson, Tobias Österlund, Lina Gunnarsson, Gabriella Arne, D G Joakim Larsson, Olle Nerman BMC Bioinformatics 2013, 14:70 (27 February 2013)
Abstract | Provisional PDF
|
|
|
4.
|
Statistical method on nonrandom clustering with application to somatic mutations in cancer
Jingjing Ye, Adam Pavlicek, Elizabeth A Lunney, Paul A Rejto, Chi-Hse Teng BMC Bioinformatics 2010, 11:11 (7 January 2010)
Abstract | Full text | PDF
| PubMed
|
|
|
5.
|
Efficient alignment of pyrosequencing reads for re-sequencing applications
Francisco Fernandes, Paulo GS da Fonseca, Luis MS Russo, Arlindo L Oliveira, Ana T Freitas BMC Bioinformatics 2011, 12:163 (16 May 2011)
Abstract | Full text | PDF
| PubMed | Cited on BioMed Central
|
|
|
6.
|
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li, Colin N Dewey BMC Bioinformatics 2011, 12:323 (4 August 2011)
Abstract | Full text | PDF
| PubMed | Cited on BioMed Central
|
Editor’s summary
RSEM is a new user-friendly software tool for quantifying transcript abundance from RNA-seq data that does not rely on a reference genome and is particularly useful for quantification with de novo transcriptome assemblies
|
|
|
7.
|
TeraStitcher - A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
Alessandro Bria, Giulio Iannello BMC Bioinformatics 2012, 13:316 (27 November 2012)
Abstract | Full text | PDF
| PubMed
|
Editor’s summary
TeraStitcher, a freely available tool, permits retrieval and processing of images generated using approximate tile positions to stitch Teravoxel-sized tiled microscopy images from large amounts of data even on memory limited machines. |
|
|
8.
|
A comparative evaluation of sequence classification programs
Adam L Bazinet, Michael P Cummings BMC Bioinformatics 2012, 13:92 (10 May 2012)
Abstract | Full text | PDF
| PubMed
|
|
|
9.
|
The taxonomic name resolution service: an online tool for automated standardization of plant names
Brad Boyle, Nicole Hopkins, Zhenyuan Lu, Juan Antonio Raygoza Garay, Dmitry Mozzherin, Tony Rees, Naim Matasci, Martha L Narro, William H Piel, Sheldon J Mckay, Sonya Lowry, Chris Freeland, Robert K Peet, Brian J Enquist BMC Bioinformatics 2013, 14:16 (16 January 2013)
Abstract | Full text | PDF
| PubMed
|
|
|
10.
|
MICAN : a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, Ca only models, Alternative alignments, and Non-sequential alignments
Shintaro Minami, Kengo Sawada, George Chikenji BMC Bioinformatics 2013, 14:24 (18 January 2013)
Abstract | Provisional PDF
| PubMed
|
|
|
11.
|
An integrated pharmacokinetics ontology and corpus for text mining
Heng-Yi Wu, Shreyas Karnik, Abhinita Subhadarshini, Zhiping Wang, Santosh Philips, Xu Han, Chienwei Chiang, Lei Liu, Malaz Boustani, Luis M Rocha, Sara K Quinney, David Flockhart, Lang Li BMC Bioinformatics 2013, 14:35 (1 February 2013)
Abstract | Full text | PDF
| PubMed
|
|
|
12.
|
The evolutionary rate of antibacterial drug targets
Arkadiusz Gladki, Szymon Kaczanowski, Pawel Szczesny, Piotr Zielenkiewicz BMC Bioinformatics 2013, 14:36 (1 February 2013)
Abstract | Provisional PDF
| PubMed
|
|
|
13.
|
FANTOM: Functional and taxonomic analysis of metagenomes
Kemal Sanli, Fredrik H Karlsson, Intawat Nookaew, Jens Nielsen BMC Bioinformatics 2013, 14:38 (1 February 2013)
Abstract | Full text | PDF
| PubMed
|
|
|
14.
|
Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms
Anthony G Doran, Christopher J Creevey BMC Bioinformatics 2013, 14:45 (8 February 2013)
Abstract | Full text | PDF
| PubMed
|
|
|
15.
|
Genome sequence-based species delimitation with confidence intervals and improved distance functions
Jan P Meier-Kolthoff, Alexander F Auch, Hans-Peter Klenk, Markus Göker BMC Bioinformatics 2013, 14:60 (21 February 2013)
Abstract | Provisional PDF
| PubMed
|
|
|
16.
|
GeneRank: Using search engine technology for the analysis of microarray experiments
Julie L Morrison, Rainer Breitling, Desmond J Higham, David R Gilbert BMC Bioinformatics 2005, 6:233 (21 September 2005)
Abstract | Full text | PDF
| PubMed | Cited on BioMed Central
|
|
|
17.
|
Statistical significance of quantitative PCR
Yann Karlen, Alan McNair, Sébastien Perseguers, Christian Mazza, Nicolas Mermod BMC Bioinformatics 2007, 8:131 (20 April 2007)
Abstract | Full text | PDF
| PubMed | Cited on BioMed Central
|
|
|
18.
|
CMKb: a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge
Jitendra Gaikwad, Varun Khanna, Subramanyam Vemulpad, Joanne Jamie, Jim Kohen, Shoba Ranganathan BMC Bioinformatics 2008, 9(Suppl 12):S25 (12 December 2008)
Abstract | Full text | PDF
| PubMed | Cited on BioMed Central
|
