Articles
Volume 8 (2007) - September 2007
|
Research article
Computational genes: a tool for molecular diagnosis and therapy of aberrant mutational phenotype Israel M Martínez-Pérez, Gong Zhang, Zoya Ignatova, Karl-Heinz Zimmermann BMC Bioinformatics 2007, 8:365 (28 September 2007) |
|
Methodology article
Hyungwon Choi, Ronglai Shen, Arul M Chinnaiyan, Debashis Ghosh BMC Bioinformatics 2007, 8:364 (27 September 2007) |
|
Research article
Estimation of the number of extreme pathways for metabolic networks Matthew Yeung, Ines Thiele, Bernard Ø Palsson BMC Bioinformatics 2007, 8:363 (27 September 2007) |
|
Methodology article
Design and implementation of a generalized laboratory data model Michael C Wendl, Scott Smith, Craig S Pohl, David J Dooling, Asif T Chinwalla, Kevin Crouse, Todd Hepler, Shin Leong, Lynn Carmichael, Mike Nhan, Benjamin J Oberkfell, Elaine R Mardis, LaDeana W Hillier, Richard K Wilson BMC Bioinformatics 2007, 8:362 (26 September 2007) |
|
Software
Huynh-Hoa Bui, John Sidney, Wei Li, Nicolas Fusseder, Alessandro Sette BMC Bioinformatics 2007, 8:361 (26 September 2007) |
|
Methodology article
Linking microarray reporters with protein functions Stan Gaj, Arie van Erk, Rachel IM van Haaften, Chris TA Evelo BMC Bioinformatics 2007, 8:360 (26 September 2007) |
|
Methodology article
Differential analysis for high density tiling microarray data Srinka Ghosh, Heather A Hirsch, Edward A Sekinger, Philipp Kapranov, Kevin Struhl, Thomas R Gingeras BMC Bioinformatics 2007, 8:359 (24 September 2007) |
|
Research article
Hui Lan, Rachel Carson, Nicholas J Provart, Anthony J Bonner BMC Bioinformatics 2007, 8:358 (21 September 2007) |
|
Research article
An evolutionary method for learning HMM structure: prediction of protein secondary structure Kyoung-Jae Won, Thomas Hamelryck, Adam Prügel-Bennett, Anders Krogh BMC Bioinformatics 2007, 8:357 (21 September 2007) |
|
Research article
Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties Jos Boekhorst, Berend Snel BMC Bioinformatics 2007, 8:356 (21 September 2007) Using basic gene properties like gene length and gene order dramatically improves the division of results in the BLAST 'gray zone' into spurious matches and genuine hits.
|
|
Research article
Accuracy of structure-based sequence alignment of automatic methods Changhoon Kim, Byungkook Lee BMC Bioinformatics 2007, 8:355 (20 September 2007) When sequence similarity is low, protein structure-based automatic alignment programs perform better than alignments from sequence alone, but they still misalign a significant fraction of conserved core residues.
|
|
Methodology article
Fathi Elloumi, Martha Nason BMC Bioinformatics 2007, 8:354 (20 September 2007) |
|
Research article
Prediction of potential drug targets based on simple sequence properties Qingliang Li, Luhua Lai BMC Bioinformatics 2007, 8:353 (20 September 2007) |
|
Methodology article
Tandem mass spectrometry data quality assessment by self-convolution Keng Choo, Wai Tham BMC Bioinformatics 2007, 8:352 (20 September 2007) |
|
Research article
Ganesan Pugalenthi, Ke Tang, PN Suganthan, G Archunan, R Sowdhamini BMC Bioinformatics 2007, 8:351 (19 September 2007) |
|
Methodology article
Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy Guangan Hu, Manuel Llinás, Jingguang Li, Peter Preiser, Zbynek Bozdech BMC Bioinformatics 2007, 8:350 (19 September 2007) |
|
Methodology article
A cross-species alignment tool ( Heng Li, Liang Guan, Tao Liu, Yiran Guo, Wei-Mou Zheng, Gane Wong, Jun Wang BMC Bioinformatics 2007, 8:349 (19 September 2007) |
|
Database
PADB : Published Association Database Hwanseok Rhee, Jin-Sung Lee BMC Bioinformatics 2007, 8:348 (19 September 2007) |
|
Research article
A unified framework for finding differentially expressed genes from microarray experiments Jahangheer S Shaik, Mohammed Yeasin BMC Bioinformatics 2007, 8:347 (18 September 2007) |
|
Research article
A framework for significance analysis of gene expression data using dimension reduction methods Lars Gidskehaug, Endre Anderssen, Arnar Flatberg, Bjørn K Alsberg BMC Bioinformatics 2007, 8:346 (18 September 2007) |
|
Research article
Benchmarking consensus model quality assessment for protein fold recognition Liam J McGuffin BMC Bioinformatics 2007, 8:345 (18 September 2007) |
|
Software
Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context Jeremiah J Faith, Andrew J Olson, Timothy S Gardner, Ravi Sachidanandam BMC Bioinformatics 2007, 8:344 (18 September 2007) |
|
Research article
Ryoko Morioka, Shigehiko Kanaya, Masami Y Hirai, Mitsuru Yano, Naotake Ogasawara, Kazuki Saito BMC Bioinformatics 2007, 8:343 (18 September 2007) |
|
Research article
A replica exchange Monte Carlo algorithm for protein folding in the HP model Chris Thachuk, Alena Shmygelska, Holger H Hoos BMC Bioinformatics 2007, 8:342 (17 September 2007) |
|
Software
Ting-Hua Huang, Bin Fan, Max F Rothschild, Zhi-Liang Hu, Kui Li, Shu-Hong Zhao BMC Bioinformatics 2007, 8:341 (17 September 2007) |
|
Research article
Impact of image segmentation on high-content screening data quality for SK-BR-3 cells Andrew A Hill, Peter LaPan, Yizheng Li, Steve Haney BMC Bioinformatics 2007, 8:340 (14 September 2007) |
|
Methodology article
A Bayesian nonparametric method for prediction in EST analysis Antonio Lijoi, Ramsés H Mena, Igor Prünster BMC Bioinformatics 2007, 8:339 (14 September 2007) |
|
Software
OntologyWidget – a reusable, embeddable widget for easily locating ontology terms Catherine C Beauheim, Farrell Wymore, Michael Nitzberg, Zachariah K Zachariah, Heng Jin, JH Pate Skene, Catherine A Ball, Gavin Sherlock BMC Bioinformatics 2007, 8:338 (13 September 2007) |
|
Research article
Mamoon Rashid, Sudipto Saha, Gajendra PS Raghava BMC Bioinformatics 2007, 8:337 (13 September 2007) |
|
Research article
Reduced modeling of signal transduction – a modular approach Markus Koschorreck, Holger Conzelmann, Sybille Ebert, Michael Ederer, Ernst Gilles BMC Bioinformatics 2007, 8:336 (13 September 2007) A new modeling approach deals with the complexity of signal transduction networks by building modular and highly reduced models that are intuitive and usable wihout complex mathematical tools or knowledge.
|
|
Research article
PathFinder: mining signal transduction pathway segments from protein-protein interaction networks Gurkan Bebek, Jiong Yang BMC Bioinformatics 2007, 8:335 (13 September 2007) |
|
Methodology article
EDISA: extracting biclusters from multiple time-series of gene expression profiles Jochen Supper, Martin Strauch, Dierk Wanke, Klaus Harter, Andreas Zell BMC Bioinformatics 2007, 8:334 (12 September 2007) |
|
Research article
Integrating sequence and structural biology with DAS Andreas Prlić, Thomas A Down, Eugene Kulesha, Robert D Finn, Andreas Kähäri, Tim JP Hubbard BMC Bioinformatics 2007, 8:333 (12 September 2007) |
|
Methodology article
Roland Barriot, David J Sherman, Isabelle Dutour BMC Bioinformatics 2007, 8:332 (11 September 2007) |
|
Methodology article
A novel approach to detect hot-spots in large-scale multivariate data Jianhua Wu, Keith M Kendrick, Jianfeng Feng BMC Bioinformatics 2007, 8:331 (11 September 2007) |
|
Research article
Emily Su, Hua-Sheng Chiu, Allan Lo, Jenn-Kang Hwang, Ting-Yi Sung, Wen-Lian Hsu BMC Bioinformatics 2007, 8:330 (8 September 2007) |
|
Research article
Gene analogue finder: a GRID solution for finding functionally analogous gene products Angelica Tulipano, Giacinto Donvito, Flavio Licciulli, Giorgio Maggi, Andreas Gisel BMC Bioinformatics 2007, 8:329 (3 September 2007) |
|
Software
Ramón Diaz-Uriarte BMC Bioinformatics 2007, 8:328 (3 September 2007) |
|
Software
ASMPKS: an analysis system for modular polyketide synthases Hongseok Tae, Eun-Bae Kong, Kiejung Park BMC Bioinformatics 2007, 8:327 (3 September 2007) |
|
Research article
Stratification bias in low signal microarray studies Brian J Parker, Simon Günter, Justin Bedo BMC Bioinformatics 2007, 8:326 (2 September 2007) |
|
Research article
Richard Tsai, Wen-Chi Chou, Ying-Shan Su, Yu-Chun Lin, Cheng-Lung Sung, Hong-Jie Dai, Irene Yeh, Wei Ku, Ting-Yi Sung, Wen-Lian Hsu BMC Bioinformatics 2007, 8:325 (1 September 2007) |
