Articles
Volume 5 (2004) - December 2004
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Research article
Analysis of oligonucleotide array experiments with repeated measures using mixed models Hao Li, Constance L Wood, Thomas V Getchell, Marilyn L Getchell, Arnold J Stromberg BMC Bioinformatics 2004, 5:209 (30 December 2004) |
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Database
A database for G proteins and their interaction with GPCRs Antigoni L Elefsinioti, Pantelis G Bagos, Ioannis C Spyropoulos, Stavros J Hamodrakas BMC Bioinformatics 2004, 5:208 (24 December 2004) |
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Research article
Clustering under the line graph transformation: application to reaction network Jose C Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu BMC Bioinformatics 2004, 5:207 (24 December 2004) |
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Research article
An empirical analysis of training protocols for probabilistic gene finders William H Majoros, Steven L Salzberg BMC Bioinformatics 2004, 5:206 (21 December 2004) |
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Methodology article
Predicting binding sites of hydrolase-inhibitor complexes by combining several methods Taner Z Sen, Andrzej Kloczkowski, Robert L Jernigan, Changhui Yan, Vasant Honavar, Kai-Ming Ho, Cai-Zhuang Wang, Yungok Ihm, Haibo Cao, Xun Gu, Drena Dobbs BMC Bioinformatics 2004, 5:205 (17 December 2004) Protein-protein interaction sites can be better predicted by combining four different methods to give a consensus prediction than by any of the individual methods on their own.
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Research article
Gary W Stuart, Michael W Berry BMC Bioinformatics 2004, 5:204 (17 December 2004) |
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Methodology article
Norman Pavelka, Mattia Pelizzola, Caterina Vizzardelli, Monica Capozzoli, Andrea Splendiani, Francesca Granucci, Paola Ricciardi-Castagnoli BMC Bioinformatics 2004, 5:203 (17 December 2004) |
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Software
Rajalakshmi Gurunathan, Bernard Van Emden, Sethuraman Panchanathan, Sudhir Kumar BMC Bioinformatics 2004, 5:202 (16 December 2004) |
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Methodology article
Kayvan Najarian, Maryam Zaheri, Ali A Rad, Siamak Najarian, Javad Dargahi BMC Bioinformatics 2004, 5:201 (16 December 2004) |
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Research article
Analysis of superfamily specific profile-profile recognition accuracy James A Casbon, Mansoor AS Saqi BMC Bioinformatics 2004, 5:200 (16 December 2004) |
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Research article
Hong-Wu Ma, Jan Buer, An-Ping Zeng BMC Bioinformatics 2004, 5:199 (16 December 2004) |
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Software
GenomeViz: visualizing microbial genomes Rohit Ghai, Torsten Hain, Trinad Chakraborty BMC Bioinformatics 2004, 5:198 (15 December 2004) |
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Research article
SCOPmap: Automated assignment of protein structures to evolutionary superfamilies Sara Cheek, Yuan Qi, S Sri Krishna, Lisa N Kinch, Nick V Grishin BMC Bioinformatics 2004, 5:197 (14 December 2004) |
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Research article
A functional hierarchical organization of the protein sequence space Noam Kaplan, Moriah Friedlich, Menachem Fromer, Michal Linial BMC Bioinformatics 2004, 5:196 (14 December 2004) |
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Software
GECKO: a complete large-scale gene expression analysis platform Joachim Theilhaber, Anatoly Ulyanov, Anish Malanthara, Jack Cole, Dapeng Xu, Robert Nahf, Michael Heuer, Christoph Brockel, Steven Bushnell BMC Bioinformatics 2004, 5:195 (10 December 2004) The Unix based software, GECKO, provides a well structured user interface for the large-scale management and analysis of microarray gene expression data
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Methodology article
Optimized LOWESS normalization parameter selection for DNA microarray data John A Berger, Sampsa Hautaniemi, Anna-Kaarina Järvinen, Henrik Edgren, Sanjit K Mitra, Jaakko Astola BMC Bioinformatics 2004, 5:194 (9 December 2004) |
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Methodology article
Comparing functional annotation analyses with Catmap Thomas Breslin, Patrik Edén, Morten Krogh BMC Bioinformatics 2004, 5:193 (9 December 2004) |
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Software
ABC: software for interactive browsing of genomic multiple sequence alignment data Gregory M Cooper, Senthil AG Singaravelu, Arend Sidow BMC Bioinformatics 2004, 5:192 (8 December 2004) |
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Research article
Yian A Chen, David J Mckillen, Shuyuan Wu, Matthew J Jenny, Robert Chapman, Paul S Gross, Gregory W Warr, Jonas S Almeida BMC Bioinformatics 2004, 5:191 (7 December 2004) |
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Software
A two-way interface between limited Systems Biology Markup Language and R Tomas Radivoyevitch BMC Bioinformatics 2004, 5:190 (7 December 2004) |
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Database
DEDB: a database of Bernett TK Lee, Tin Tan, Shoba Ranganathan BMC Bioinformatics 2004, 5:189 (7 December 2004) |
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Research article
Haplotype frequency estimation error analysis in the presence of missing genotype data Enda D Kelly, Fabian Sievers, Ross McManus BMC Bioinformatics 2004, 5:188 (1 December 2004) |
