Articles
Volume 13 (2012) - January 2012
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Research article
Fast automatic quantitative cell replication with fluorescent live cell imaging Ching-Wei Wang BMC Bioinformatics 2012, 13:21 (31 January 2012) |
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Software
g Gabriele Sales, Enrica Calura, Duccio Cavalieri, Chiara Romualdi BMC Bioinformatics 2012, 13:20 (31 January 2012) |
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Software
Cyrille Lepoivre, Aurélie Bergon, Fabrice Lopez, Narayanan B Perumal, Catherine Nguyen, Jean Imbert, Denis Puthier BMC Bioinformatics 2012, 13:19 (31 January 2012) |
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Methodology article
Propagating semantic information in biochemical network models Marvin Schulz, Edda Klipp, Wolfram Liebermeister BMC Bioinformatics 2012, 13:18 (30 January 2012) Semantic propagation is a new method that applies annotation to systems biology models, enabling comparisons based on both their own annotations, and those of surrounding elements in the network, facilitating the alignment of models with missing annotations
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Research article
Training text chunkers on a silver standard corpus: can silver replace gold? Ning Kang, Erik M van Mulligen, Jan A Kors BMC Bioinformatics 2012, 13:17 (30 January 2012) |
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Methodology article
Automatic categorization of diverse experimental information in the bioscience literature Ruihua Fang, Gary Schindelman, Kimberly Auken, Jolene Fernandes, Wen Chen, Xiaodong Wang, Paul Davis, Mary Tuli, Steven J Marygold, Gillian Millburn, Beverley Matthews, Haiyan Zhang, Nick Brown, William M Gelbart, Paul W Sternberg BMC Bioinformatics 2012, 13:16 (26 January 2012) |
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Software
The EnzymeTracker: an open-source laboratory information management system for sample tracking Thomas Triplet, Gregory Butler BMC Bioinformatics 2012, 13:15 (26 January 2012) |
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Software
Muneef Ayyash, Hashem Tamimi, Yaqoub Ashhab BMC Bioinformatics 2012, 13:14 (23 January 2012) |
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Methodology article
Douglas Londono, Steven Buyske, Stephen J Finch, Swarkar Sharma, Carol A Wise, Derek Gordon BMC Bioinformatics 2012, 13:13 (20 January 2012) |
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Research article
Core module biomarker identification with network exploration for breast cancer metastasis Ruoting Yang, Bernie J Daigle, Linda R Petzold, Francis J Doyle BMC Bioinformatics 2012, 13:12 (18 January 2012) |
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Research article
Convergent evolution in structural elements of proteins investigated using cross profile analysis Kentaro Tomii, Yoshito Sawada, Shinya Honda BMC Bioinformatics 2012, 13:11 (16 January 2012) |
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Methodology article
MIPHENO: data normalization for high throughput metabolite analysis Shannon M Bell, Lyle D Burgoon, Robert L Last BMC Bioinformatics 2012, 13:10 (13 January 2012) |
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Software
PyElph - a software tool for gel images analysis and phylogenetics Ana Brânduşa Pavel, Cristian Ioan Vasile BMC Bioinformatics 2012, 13:9 (13 January 2012) |
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Software
An integrative variant analysis suite for whole exome next-generation sequencing data Danny Challis, Jin Yu, Uday S Evani, Andrew R Jackson, Sameer Paithankar, Cristian Coarfa, Aleksandar Milosavljevic, Richard A Gibbs, Fuli Yu BMC Bioinformatics 2012, 13:8 (12 January 2012) The Atlas2 is an analysis suite for variant calling in whole exome sequencing that combines regression models and user-adjustable cutoffs in order to separate true SNPs and INDELs from sequencing and mapping errors, with high sensitivity
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Research article
Protein docking prediction using predicted protein-protein interface Bin Li, Daisuke Kihara BMC Bioinformatics 2012, 13:7 (10 January 2012) A novel pairwise protein docking algorithm, PI-LZerD, is an important development applicable to multiple protein docking and valuable for providing pictures of interactions in network analyses, that performs better than alternatives in benchmark experiment.
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Database
MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases Akhil Kumar, Patrick F Suthers, Costas D Maranas BMC Bioinformatics 2012, 13:6 (10 January 2012) |
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Software
proTRAC - a software for probabilistic piRNA cluster detection, visualization and analysis David Rosenkranz, Hans Zischler BMC Bioinformatics 2012, 13:5 (10 January 2012) |
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Research article
A comparison study on feature selection of DNA structural properties for promoter prediction Yanglan Gan, Jihong Guan, Shuigeng Zhou BMC Bioinformatics 2012, 13:4 (7 January 2012) |
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Research article
Self-organizing ontology of biochemically relevant small molecules Leonid L Chepelev, Janna Hastings, Marcus Ennis, Christoph Steinbeck, Michel Dumontier BMC Bioinformatics 2012, 13:3 (6 January 2012) |
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Software
ABrowse - a customizable next-generation genome browser framework Lei Kong, Jun Wang, Shuqi Zhao, Xiaocheng Gu, Jingchu Luo, Ge Gao BMC Bioinformatics 2012, 13:2 (5 January 2012) |
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Software
GuiTope: an application for mapping random-sequence peptides to protein sequences Rebecca F Halperin, Phillip Stafford, Jack S Emery, Krupa Navalkar, Stephen Johnston BMC Bioinformatics 2012, 13:1 (3 January 2012) |
