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		Methodology article Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data Thorfinn Sand Korneliussen, Ida Moltke, Anders Albrechtsen, Rasmus Nielsen BMC Bioinformatics 2013, 14:289 (2 October 2013) Abstract \| Provisional PDF
		Research article Drug repositioning for orphan genetic diseases through Conserved Anticoexpressed Gene Clusters (CAGCs) Ivan Molineris, Ugo Ala, Paolo Provero, Ferdinando Di Cunto BMC Bioinformatics 2013, 14:288 (2 October 2013) Abstract \| Provisional PDF
		Research article Statistical Analysis of Dendritic Spine Distributions in Rat Hippocampal Cultures Aruna Jammalamadaka, Sourav Banerjee, Kenneth S Kosik, Bangalore S Manjunath BMC Bioinformatics 2013, 14:287 (2 October 2013) Abstract \| Provisional PDF
		Research article The scoring of poses in protein-protein docking: current capabilities and future directions Iain H Moal, Mieczyslaw Torchala, Paul A Bates, Juan Fernández-Recio BMC Bioinformatics 2013, 14:286 (1 October 2013) Abstract \| Provisional PDF
		Research article Using PPI network autocorrelation in hierarchical multi-label classification trees for gene function prediction Daniela Stojanova, Michelangelo Ceci, Donato Malerba, Sa¿o D¿eroski BMC Bioinformatics 2013, 14:285 (26 September 2013) Abstract \| Provisional PDF \| PubMed
		Software DaGO-Fun: tool for Gene Ontology-based functional analysis using term information content measures Gaston K Mazandu, Nicola J Mulder BMC Bioinformatics 2013, 14:284 (25 September 2013) Abstract \| Full text \| PDF \| PubMed
		Software BGFit: management and automated fitting of biological growth curves André Veríssimo, Laura Paixão, Ana Neves, Susana Vinga BMC Bioinformatics 2013, 14:283 (25 September 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article Large-scale multiple testing in genome-wide association studies via region-specific hidden Markov models Jian Xiao, Wensheng Zhu, Jianhua Guo BMC Bioinformatics 2013, 14:282 (25 September 2013) Abstract \| Provisional PDF \| PubMed
		Software A modular framework for biomedical concept recognition David Campos, Sérgio Matos, José Oliveira BMC Bioinformatics 2013, 14:281 (24 September 2013) Abstract \| Full text \| PDF \| PubMed
		Software Peak Finder Metaserver - a novel application for finding peaks in ChIP-seq data Marcin Kruczyk, Husen M Umer, Stefan Enroth, Jan Komorowski BMC Bioinformatics 2013, 14:280 (23 September 2013) Abstract \| Provisional PDF \| PubMed
		Research article Archetypal analysis of diverse Pseudomonas aeruginosa transcriptomes reveals adaptation in cystic fibrosis airways Juliane Charlotte Thøgersen, Morten Mørup, Søren Damkiær, Søren Molin, Lars Jelsbak BMC Bioinformatics 2013, 14:279 (23 September 2013) Abstract \| Provisional PDF \| PubMed
		Research article Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data Mingzhu Zhu, Jeremy L Dahmen, Gary Stacey, Jianlin Cheng BMC Bioinformatics 2013, 14:278 (22 September 2013) Abstract \| Provisional PDF \| PubMed
		Software SynTView — an interactive multi-view genome browser for next-generation comparative microorganism genomics Pierre Lechat, Erika Souche, Ivan Moszer BMC Bioinformatics 2013, 14:277 (22 September 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article Membrane protein orientation and refinement using a knowledge-based statistical potential Timothy Nugent, David T Jones BMC Bioinformatics 2013, 14:276 (18 September 2013) Abstract \| Provisional PDF \| PubMed
		Research article A molecular model of the full-length human NOD-like receptor family CARD domain containing 5 (NLRC5) protein János Mótyán, Péter Bagossi, Szilvia Benkő, József Tőzsér BMC Bioinformatics 2013, 14:275 (17 September 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Comparing a few SNP calling algorithms using low-coverage sequencing data Xiaoqing Yu, Shuying Sun BMC Bioinformatics 2013, 14:274 (17 September 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Learning a Markov Logic network for supervised gene regulatory network inference Céline Brouard, Christel Vrain, Julie Dubois, David Castel, Marie-Anne Debily, Florence d’Alché-Buc BMC Bioinformatics 2013, 14:273 (12 September 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article Levenshtein error-correcting barcodes for multiplexed DNA sequencing Tilo Buschmann, Leonid V Bystrykh BMC Bioinformatics 2013, 14:272 (11 September 2013) Abstract \| Provisional PDF \| PubMed
		Software MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates Caroline Bérard, Michael Seifert, Tristan Mary-Huard, Marie-Laure Martin-Magniette BMC Bioinformatics 2013, 14:271 (9 September 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Maximum-parsimony haplotype frequencies inference based on a joint constrained sparse representation of pooled DNA Guido H Jajamovich, Alexandros Iliadis, Dimitris Anastassiou, Xiaodong Wang BMC Bioinformatics 2013, 14:270 (8 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article Efficient alignment of RNA secondary structures using sparse dynamic programming Cuncong Zhong, Shaojie Zhang BMC Bioinformatics 2013, 14:269 (8 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Centroid based clustering of high throughput sequencing reads based on n-mer counts Alexander Solovyov, W Lipkin BMC Bioinformatics 2013, 14:268 (8 September 2013) Abstract \| Full text \| PDF \| PubMed
		Software Pathway-PDT: a flexible pathway analysis tool for nuclear families Yo Park, Michael Schmidt, Eden R Martin, Margaret A Pericak-Vance, Ren-Hua Chung BMC Bioinformatics 2013, 14:267 (4 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article μHEM for identification of differentially expressed miRNAs using hypercuboid equivalence partition matrix Sushmita Paul, Pradipta Maji BMC Bioinformatics 2013, 14:266 (4 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila Penelope Coggill, Ruth Y Eberhardt, Robert D Finn, Yuanyuan Chang, Lukasz Jaroszewski, Adam Godzik, Debanu Das, Qingping Xu, Herbert L Axelrod, L Aravind, Alexey G Murzin, Alex Bateman BMC Bioinformatics 2013, 14:265 (3 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed

	All
		Methodology article Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data Thorfinn Sand Korneliussen, Ida Moltke, Anders Albrechtsen, Rasmus Nielsen BMC Bioinformatics 2013, 14:289 (2 October 2013) Abstract \| Provisional PDF
		Research article Drug repositioning for orphan genetic diseases through Conserved Anticoexpressed Gene Clusters (CAGCs) Ivan Molineris, Ugo Ala, Paolo Provero, Ferdinando Di Cunto BMC Bioinformatics 2013, 14:288 (2 October 2013) Abstract \| Provisional PDF
		Research article Statistical Analysis of Dendritic Spine Distributions in Rat Hippocampal Cultures Aruna Jammalamadaka, Sourav Banerjee, Kenneth S Kosik, Bangalore S Manjunath BMC Bioinformatics 2013, 14:287 (2 October 2013) Abstract \| Provisional PDF
		Research article The scoring of poses in protein-protein docking: current capabilities and future directions Iain H Moal, Mieczyslaw Torchala, Paul A Bates, Juan Fernández-Recio BMC Bioinformatics 2013, 14:286 (1 October 2013) Abstract \| Provisional PDF
		Research article Using PPI network autocorrelation in hierarchical multi-label classification trees for gene function prediction Daniela Stojanova, Michelangelo Ceci, Donato Malerba, Sa¿o D¿eroski BMC Bioinformatics 2013, 14:285 (26 September 2013) Abstract \| Provisional PDF \| PubMed
		Software DaGO-Fun: tool for Gene Ontology-based functional analysis using term information content measures Gaston K Mazandu, Nicola J Mulder BMC Bioinformatics 2013, 14:284 (25 September 2013) Abstract \| Full text \| PDF \| PubMed
		Software BGFit: management and automated fitting of biological growth curves André Veríssimo, Laura Paixão, Ana Neves, Susana Vinga BMC Bioinformatics 2013, 14:283 (25 September 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article Large-scale multiple testing in genome-wide association studies via region-specific hidden Markov models Jian Xiao, Wensheng Zhu, Jianhua Guo BMC Bioinformatics 2013, 14:282 (25 September 2013) Abstract \| Provisional PDF \| PubMed
		Software A modular framework for biomedical concept recognition David Campos, Sérgio Matos, José Oliveira BMC Bioinformatics 2013, 14:281 (24 September 2013) Abstract \| Full text \| PDF \| PubMed
		Software Peak Finder Metaserver - a novel application for finding peaks in ChIP-seq data Marcin Kruczyk, Husen M Umer, Stefan Enroth, Jan Komorowski BMC Bioinformatics 2013, 14:280 (23 September 2013) Abstract \| Provisional PDF \| PubMed
		Research article Archetypal analysis of diverse Pseudomonas aeruginosa transcriptomes reveals adaptation in cystic fibrosis airways Juliane Charlotte Thøgersen, Morten Mørup, Søren Damkiær, Søren Molin, Lars Jelsbak BMC Bioinformatics 2013, 14:279 (23 September 2013) Abstract \| Provisional PDF \| PubMed
		Research article Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data Mingzhu Zhu, Jeremy L Dahmen, Gary Stacey, Jianlin Cheng BMC Bioinformatics 2013, 14:278 (22 September 2013) Abstract \| Provisional PDF \| PubMed
		Software SynTView — an interactive multi-view genome browser for next-generation comparative microorganism genomics Pierre Lechat, Erika Souche, Ivan Moszer BMC Bioinformatics 2013, 14:277 (22 September 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article Membrane protein orientation and refinement using a knowledge-based statistical potential Timothy Nugent, David T Jones BMC Bioinformatics 2013, 14:276 (18 September 2013) Abstract \| Provisional PDF \| PubMed
		Research article A molecular model of the full-length human NOD-like receptor family CARD domain containing 5 (NLRC5) protein János Mótyán, Péter Bagossi, Szilvia Benkő, József Tőzsér BMC Bioinformatics 2013, 14:275 (17 September 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Comparing a few SNP calling algorithms using low-coverage sequencing data Xiaoqing Yu, Shuying Sun BMC Bioinformatics 2013, 14:274 (17 September 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Learning a Markov Logic network for supervised gene regulatory network inference Céline Brouard, Christel Vrain, Julie Dubois, David Castel, Marie-Anne Debily, Florence d’Alché-Buc BMC Bioinformatics 2013, 14:273 (12 September 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article Levenshtein error-correcting barcodes for multiplexed DNA sequencing Tilo Buschmann, Leonid V Bystrykh BMC Bioinformatics 2013, 14:272 (11 September 2013) Abstract \| Provisional PDF \| PubMed
		Software MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates Caroline Bérard, Michael Seifert, Tristan Mary-Huard, Marie-Laure Martin-Magniette BMC Bioinformatics 2013, 14:271 (9 September 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Maximum-parsimony haplotype frequencies inference based on a joint constrained sparse representation of pooled DNA Guido H Jajamovich, Alexandros Iliadis, Dimitris Anastassiou, Xiaodong Wang BMC Bioinformatics 2013, 14:270 (8 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article Efficient alignment of RNA secondary structures using sparse dynamic programming Cuncong Zhong, Shaojie Zhang BMC Bioinformatics 2013, 14:269 (8 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Centroid based clustering of high throughput sequencing reads based on n-mer counts Alexander Solovyov, W Lipkin BMC Bioinformatics 2013, 14:268 (8 September 2013) Abstract \| Full text \| PDF \| PubMed
		Software Pathway-PDT: a flexible pathway analysis tool for nuclear families Yo Park, Michael Schmidt, Eden R Martin, Margaret A Pericak-Vance, Ren-Hua Chung BMC Bioinformatics 2013, 14:267 (4 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article μHEM for identification of differentially expressed miRNAs using hypercuboid equivalence partition matrix Sushmita Paul, Pradipta Maji BMC Bioinformatics 2013, 14:266 (4 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila Penelope Coggill, Ruth Y Eberhardt, Robert D Finn, Yuanyuan Chang, Lukasz Jaroszewski, Adam Godzik, Debanu Das, Qingping Xu, Herbert L Axelrod, L Aravind, Alexey G Murzin, Alex Bateman BMC Bioinformatics 2013, 14:265 (3 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed