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virtualArray: a R/bioconductor package to merge raw data from different microarray platforms
Andreas Heider, Rüdiger Alt BMC Bioinformatics 2013, 14:75 (2 March 2013)
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MethylPCA: a toolkit to control for confounders in methylome-wide association studies
Wenan Chen, Guimin Gao, Srilaxmi Nerella, Christina M Hultman, Patrik KE Magnusson, Patrick F Sullivan, Karolina A Aberg, Edwin JCG van den Oord BMC Bioinformatics 2013, 14:74 (2 March 2013)
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search GenBank: interactive orchestration and ad-hoc choreography of Web services in the exploration of the biomedical resources of the National Center For Biotechnology Information
Dariusz Mrozek, Bo¿ena Ma¿ysiak-Mrozek, Artur Si¿¿nik BMC Bioinformatics 2013, 14:73 (1 March 2013)
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Identification of germ cell-specific genes in mammalian meiotic prophase
Yunfei Li, Debjit Ray, Ping Ye BMC Bioinformatics 2013, 14:72 (27 February 2013)
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Evaluating the use of different positional strategies for sentence selection in biomedical literature summarization
Laura Plaza, Jorge Carrillo-de-Albornoz BMC Bioinformatics 2013, 14:71 (27 February 2013)
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A novel method for cross-species gene expression analysis
Erik Kristiansson, Tobias Österlund, Lina Gunnarsson, Gabriella Arne, D G Joakim Larsson, Olle Nerman BMC Bioinformatics 2013, 14:70 (27 February 2013)
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BOND: Basic OligoNucleotide Design
Lucian Ilie, Hamid Mohamadi, Geoffrey Brian Golding, William F Smyth BMC Bioinformatics 2013, 14:69 (27 February 2013)
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Predictability of gene ontology slim-terms from primary structure information in Embryophyta plant proteins
Jorge Alberto Jaramillo-Garzón, Joan Josep Gallardo-Chacón, César Germán Castellanos-Domínguez, Alexandre Prera-Lluna BMC Bioinformatics 2013, 14:68 (26 February 2013)
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A hybrid short read mapping accelerator
Yupeng Chen, Bertil Schmidt, Douglas L Maskell BMC Bioinformatics 2013, 14:67 (26 February 2013)
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Local search for the generalized tree alignment
Andrés Varón, Ward C Wheeler BMC Bioinformatics 2013, 14:66 (26 February 2013)
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FAVR (Filtering and Annotation of Variants that are Rare): methods to facilitate the analysis of rare germline genetic variants from massively parallel sequencing datasets
Bernard J Pope, Tu Nguyen-Dumont, Fabrice Odefrey, Russell Bell, Sean V Tavtigian, David E Goldgar, Andrew Lonie, Melissa C Southey, Daniel J Park BMC Bioinformatics 2013, 14:65 (25 February 2013)
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Improved shrunken centroid classifiers for high-dimensional class-imbalanced data
Rok Blagus, Lara Lusa BMC Bioinformatics 2013, 14:64 (23 February 2013)
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Protein structure based prediction of catalytic residues
J Eduardo Fajardo, Andras Fiser BMC Bioinformatics 2013, 14:63 (22 February 2013)
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ClusCo: clustering and comparison of protein models
Michal Jamroz, Andrzej Kolinski BMC Bioinformatics 2013, 14:62 (22 February 2013)
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ETHNOPRED: a novel machine learning method for accurate continental and sub-continental ancestry identification and population stratification correction
Mohsen Hajiloo, Yadav Sapkota, John R Mackey, Paula Robson, Russell Greiner, Sambasivarao Damaraju BMC Bioinformatics 2013, 14:61 (22 February 2013)
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Genome sequence-based species delimitation with confidence intervals and improved distance functions
Jan P Meier-Kolthoff, Alexander F Auch, Hans-Peter Klenk, Markus Göker BMC Bioinformatics 2013, 14:60 (21 February 2013)
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Active Subnetwork Recovery with a Mechanism-Dependent Scoring Function; with application to Angiogenesis and Organogenesis studies
Ilana Lichtenstein, Michael A Charleston, Tiberio S Caetano, Jennifer R Gamble, Mathew A Vadas BMC Bioinformatics 2013, 14:59 (21 February 2013)
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Prediction of a time-to-event trait using genome wide SNP data
Jinseog Kim, Insuk Sohn, Dae-Soon Son, Dong Hwan Kim, Taejin Ahn, Sin-Ho Jung BMC Bioinformatics 2013, 14:58 (19 February 2013)
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A computational method for detecting copy number variations using scale-space filtering
Jongkeun Lee, Unjoo Lee, Baeksop Kim, Jeehee Yoon BMC Bioinformatics 2013, 14:57 (18 February 2013)
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Optimal precursor ion selection for LC-MALDI MS/MS
Alexandra Zerck, Eckhard Nordhoff, Hans Lehrach, Knut Reinert BMC Bioinformatics 2013, 14:56 (18 February 2013)
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Predictive modeling of anti-malarial molecules inhibiting apicoplast formation
Salma Jamal, Vinita Periwal, Open Source Drug Discovery Consortium , Vinod Scaria BMC Bioinformatics 2013, 14:55 (15 February 2013)
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Gimli: open source and high-performance biomedical name recognition
David Campos, Sérgio Matos, José Luís Oliveira BMC Bioinformatics 2013, 14:54 (15 February 2013)
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STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation
Tobias Wittkop, Emily TerAvest, Uday S Evani, K Mathew Fleisch, Ari E Berman, Corey Powell, Nigam H Shah, Sean D Mooney BMC Bioinformatics 2013, 14:53 (14 February 2013)
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PREDIVAC: CD4+ T-cell epitope prediction for vaccine design that covers 95% of HLA class II DR protein diversity
Patricio Oyarzún, Jonathan J Ellis, Mikael Bodén, Bo¿tjan Kobe BMC Bioinformatics 2013, 14:52 (14 February 2013)
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Discovery of novel biomarkers and phenotypes by semantic technologies
Carlo A Trugenberger, Christoph Wälti, David Peregrim, Mark E Sharp, Svetlana Bureeva BMC Bioinformatics 2013, 14:51 (13 February 2013)
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