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Learning smoothing models of copy number
profiles using breakpoint annotations
Toby Dylan Hocking, Gudrun Schleiermacher, Isabelle Janoueix-Lerosey, Valentina Boeva, Julie Cappo, Olivier Delattre, Francis Bach, Jean-Philippe Vert BMC Bioinformatics 2013, 14:164 (22 May 2013)
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Protein complex detection using interaction reliability assessment and weighted clustering coefficient
Nazar Zaki, Dmitry Efimov, Jose Berengueres BMC Bioinformatics 2013, 14:163 (20 May 2013)
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Calcium (Ca2+) waves data calibration and analysis using image processing techniques
Carlos Milovic, Carolina Oses, Manuel Villalón, Sergio Uribe, Carlos Lizama, Claudia Prieto, Marcelo E Andia, Pablo Irarrazaval, Cristian Tejos BMC Bioinformatics 2013, 14:162 (16 May 2013)
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Efficient algorithms for biological stems search
Tian Mi, Sanguthevar Rajasekaran BMC Bioinformatics 2013, 14:161 (16 May 2013)
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Disk-based k-mer counting on a PC
Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Szymon Grabowski BMC Bioinformatics 2013, 14:160 (16 May 2013)
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MIMO: an efficient tool for molecular interaction maps overlap
Pietro Di Lena, Gang Wu, Pier Luigi Martelli, Rita Casadio, Christine Nardini BMC Bioinformatics 2013, 14:159 (15 May 2013)
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Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient
Arlin Stoltzfus, Hilmar Lapp, Naim Matasci, Helena Deus, Brian Sidlauskas, Christian M Zmasek, Gaurav Vaidya, Enrico Pontelli, Karen Cranston, Rutger Vos, Campbell O Webb, Luke J Harmon, Megan Pirrung, Brian O'Meara, Matthew W Pennell, Siavash Mirarab, Michael S Rosenberg, James P Balhoff, Holly M Bik, Tracy A Heath, Peter E Midford, Joseph W Brown, Emily Jane McTavish, Jeet Sukumaran, Mark Westneat, Michael E Alfaro, Aaron Steele, Greg Jordan BMC Bioinformatics 2013, 14:158 (13 May 2013)
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Copy number variation genotyping using family information
Jen-hwa Chu, Angela Rogers, Iuliana Ionita-Laza, Katayoon Darvishi, Ryan E Mills, Charles Lee, Benjamin A Raby BMC Bioinformatics 2013, 14:157 (9 May 2013)
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Real-time interactive data mining for chemical imaging information: application to automated histopathology
David Mayerich, Michael Walsh, Matthew Schulmerich, Rohit Bhargava BMC Bioinformatics 2013, 14:156 (8 May 2013)
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Greedy feature selection for glycan chromatography data with the generalized Dirichlet distribution
Marie C Galligan, Radka Saldova, Matthew P Campbell, Pauline M Rudd, Thomas B Murphy BMC Bioinformatics 2013, 14:155 (7 May 2013)
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Reconstituting protein interaction networks using parameter-dependent domain-domain interactions
Vesna Memišević, Anders Wallqvist, Jaques Reifman BMC Bioinformatics 2013, 14:154 (7 May 2013)
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Iterative rank-order normalization of gene expression microarray data
Eric A Welsh, Steven A Eschrich, Anders E Berglund, David A Fenstermacher BMC Bioinformatics 2013, 14:153 (7 May 2013)
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Comparison study on statistical features of predicted secondary structures for protein structural class prediction: From content to position
Qi Dai, Yan Li, Xiaoqing Liu, Yuhua Yao, Yunjie Cao, Pingan He BMC Bioinformatics 2013, 14:152 (4 May 2013)
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Analysis of multiple phenotypes in genome-wide genetic mapping studies
Chen Suo, Timothea Toulopoulou, Elvira Bramon, Muriel Walshe, Marco Picchioni, Robin Murray, Jurg Ott BMC Bioinformatics 2013, 14:151 (2 May 2013)
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CNV-TV: A robust method to discover copy number variation from short sequencing reads
Junbo Duan, Ji-Gang Zhang, Hong-Wen Deng, Yu-Ping Wang BMC Bioinformatics 2013, 14:150 (2 May 2013)
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Quantifying variances in comparative RNA secondary structure prediction
James WJ Anderson, Ádám Novák, Zsuzsanna Sükösd, Michael Golden, Preeti Arunapuram, Ingolfur Edvardsson, Jotun Hein BMC Bioinformatics 2013, 14:149 (1 May 2013)
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Software for selecting the most informative sets of genomic loci for multi-target microbial typing
Matthew VN O’Sullivan, Vitali Sintchenko, Gwendolyn L Gilbert BMC Bioinformatics 2013, 14:148 (1 May 2013)
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A metadata-aware application for remote scoring and exchange of tissue microarray images
Lorna Morris, Andrew Tsui, Charles Crichton, Steve Harris, Peter H Maccallum, William J Howat, Jim Davies, James D Brenton, Carlos Caldas BMC Bioinformatics 2013, 14:147 (1 May 2013)
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Combining MEDLINE and publisher data to create parallel corpora for the automatic translation of biomedical text
Antonio Jimeno Yepes, Élise Prieur-Gaston, Aurélie Névéol BMC Bioinformatics 2013, 14:146 (30 April 2013)
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Quality control, analysis and secure sharing of Luminex(R) immunoassay data using the open source LabKey Server platform
Josh Eckels, Cory Nathe, Elizabeth K Nelson, Sara G Shoemaker, Elizabeth Nostrand, Nicole L Yates, Vicki C Ashley, Linda J Harris, Mark Bollenbeck, Youyi Fong, Georgia D Tomaras, Britt Piehler BMC Bioinformatics 2013, 14:145 (30 April 2013)
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Steiner tree methods for optimal sub-network identification: an empirical study
Afshin Sadeghi, Holger Fröhlich BMC Bioinformatics 2013, 14:144 (30 April 2013)
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Investigating the concordance of Gene Ontology terms reveals the intra- and inter-platform reproducibility of enrichment analysis
Lifang Zhang, Juan Zhang, Gang Yang, Di Wu, Lina Jiang, Zhining Wen, Menglong Li BMC Bioinformatics 2013, 14:143 (29 April 2013)
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Incorporating phylogenetic-based covarying mutations into RNAalifold for RNA consensus structure prediction
Ping Ge, Shaojie Zhang BMC Bioinformatics 2013, 14:142 (27 April 2013)
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An automated graphics tool for comparative genomics: the Coulson plot generator
Helen I Field, Richard MR Coulson, Mark C Field BMC Bioinformatics 2013, 14:141 (27 April 2013)
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D-Light on promoters: A client-server system for the analysis and
visualization of cis-regulatory elements
Josef Laimer, Clemens J Zuzan, Tobias Ehrenberger, Monika Freudenberger, Simone Gschwandtner, Carina Lebherz, Peter Lackner BMC Bioinformatics 2013, 14:140 (24 April 2013)
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