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BMC Bioinformatics

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Editor-in-Chief
Melissa Norton, MD

Biology Editor
Penelope Webb, PhD

In-house Editor
Tim Sands PhD



 

 

BMC Bioinformatics publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.
Contents of Volume 9 Suppl 6
Symposium of Computations in Bioinformatics and Bioscience (SCBB07)
Research
from Symposium of Computations in Bioinformatics and Bioscience (SCBB07)
Iowa City, Iowa, USA. 1315 August 2007
Edited by Guoqing Lu, Jun Ni, Thomas L Casavant and Brian Athey

Introduction
Highlighting computations in bioscience and bioinformatics: review of the Symposium of Computations in Bioinformatics and Bioscience (SCBB07)
Guoqing Lu, Jun Ni
BMC Bioinformatics 2008, 9(Suppl 6):S1 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
MLIP: using multiple processors to compute the posterior probability of linkage
Manika Govil, Alberto M Segre, Veronica J Vieland
BMC Bioinformatics 2008, 9(Suppl 6):S2 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Evolutionary conservation of DNA-contact residues in DNA-binding domains
Yao-Lin Chang, Huai-Kuang Tsai, Cheng-Yan Kao, Yung-Chian Chen, Yuh-Jyh Hu, Jinn-Moon Yang
BMC Bioinformatics 2008, 9(Suppl 6):S3 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
A topological transformation in evolutionary tree search methods based on maximum likelihood combining p-ECR and neighbor joining
Mao-Zu Guo, Jian-Fu Li, Yang Liu
BMC Bioinformatics 2008, 9(Suppl 6):S4 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Protein structural class prediction based on an improved statistical strategy
Fei Gu, Hang Chen, Jun Ni
BMC Bioinformatics 2008, 9(Suppl 6):S5 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment
George Chin Jr, Daniel G Chavarria, Grant C Nakamura, Heidi J Sofia
BMC Bioinformatics 2008, 9(Suppl 6):S6 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Asymmetric bagging and feature selection for activities prediction of drug molecules
Guo-Zheng Li, Hao-Hua Meng, Wen-Cong Lu, Jack Y Yang, Mary Qu Yang
BMC Bioinformatics 2008, 9(Suppl 6):S7 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Dimension reduction with redundant gene elimination for tumor classification
Xue-Qiang Zeng, Guo-Zheng Li, Jack Y Yang, Mary Qu Yang, Geng-Feng Wu
BMC Bioinformatics 2008, 9(Suppl 6):S8 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Comparative analyses of bidirectional promoters in vertebrates
Mary Qu Yang, James Taylor, Laura Elnitski
BMC Bioinformatics 2008, 9(Suppl 6):S9 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Application of the Linux cluster for exhaustive window haplotype analysis using the FBAT and Unphased programs
Hiroyuki Mishima, Andrew C Lidral, Jun Ni
BMC Bioinformatics 2008, 9(Suppl 6):S10 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Drug interaction prediction using ontology-driven hypothetical assertion framework for pathway generation followed by numerical simulation
Takeshi Arikuma, Sumi Yoshikawa, Ryuzo Azuma, Kentaro Watanabe, Kazumi Matsumura, Akihiko Konagaya
BMC Bioinformatics 2008, 9(Suppl 6):S11 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Genetic weighted k-means algorithm for clustering large-scale gene expression data
Fang-Xiang Wu
BMC Bioinformatics 2008, 9(Suppl 6):S12 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Quality assessment of peptide tandem mass spectra
Fang-Xiang Wu, Pierre Gagn, Arnaud Droit, Guy G Poirier
BMC Bioinformatics 2008, 9(Suppl 6):S13 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Improving the power for detecting overlapping genes from multiple DNA microarray-derived gene lists
Xutao Deng, Jun Xu, Charles Wang
BMC Bioinformatics 2008, 9(Suppl 6):S14 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
An improved string composition method for sequence comparison
Guoqing Lu, Shunpu Zhang, Xiang Fang
BMC Bioinformatics 2008, 9(Suppl 6):S15 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
MCM-test: a fuzzy-set-theory-based approach to differential analysis of gene pathways
Lily R Liang, Vinay Mandal, Yi Lu, Deepak Kumar
BMC Bioinformatics 2008, 9(Suppl 6):S16 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Quantitative analysis of numerical solvers for oscillatory biomolecular system models
Chang F Quo, May D Wang
BMC Bioinformatics 2008, 9(Suppl 6):S17 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses
Todd H Stokes, JT Torrance, Henry Li, May D Wang
BMC Bioinformatics 2008, 9(Suppl 6):S18 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
A practical comparison of two K-Means clustering algorithms
Gregory A Wilkin, Xiuzhen Huang
BMC Bioinformatics 2008, 9(Suppl 6):S19 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

 

 

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