Supplements
Editor-in-Chief Melissa Norton, MD
Biology Editor Penelope Webb, PhD
In-house Editor Danielle Burgess PhD
BMC Bioinformatics publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.
Contents of Volume 8 Suppl 1
Italian Society of Bioinformatics (BITS): Annual Meeting 2006
Research
from Italian Society of Bioinformatics (BITS): Annual Meeting 2006
Bologna, Italy. 28
29 April, 2006
Edited by Rita Casadio, Manuela Helmer-Citterich, Graziano Pesole
Introduction
Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics Rita Casadio, Manuela Helmer-Citterich, Graziano Pesole BMC Bioinformatics 2007, 8 (Suppl 1):S1 (8 [Abstract ] [Full text ] [PDF ]
Research
BioWMS: a web-based Workflow Management System for bioinformatics Ezio Bartocci, Flavio Corradini, Emanuela Merelli, Lorenzo Scortichini BMC Bioinformatics 2007, 8 (Suppl 1):S2 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
A computational approach for detecting peptidases and their specific inhibitors at the genome level Lisa Bartoli, Remo Calabrese, Piero Fariselli, Damiano G Mita, Rita Casadio BMC Bioinformatics 2007, 8 (Suppl 1):S3 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics Massimo Bernaschi, Filippo Castiglione, Alessandra Ferranti, Caius Gavrila, Michele Tinti, Gianni Cesareni BMC Bioinformatics 2007, 8 (Suppl 1):S4 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Cross platform microarray analysis for robust identification of differentially expressed genes Roberta Bosotti, Giuseppe Locatelli, Sandra Healy, Emanuela Scacheri, Luca Sartori, Ciro Mercurio, Raffaele Calogero, Antonella Isacchi BMC Bioinformatics 2007, 8 (Suppl 1):S5 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
The MEPS server for identifying protein conformational epitopes Tiziana Castrignan BMC Bioinformatics 2007, 8 (Suppl 1):S6 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
A Grid-based solution for management and analysis of microarrays in distributed experiments Ivan Porro, Livia Torterolo, Luca Corradi, Marco Fato, Adam Papadimitropoulos, Silvia Scaglione, Andrea Schenone, Federica Viti BMC Bioinformatics 2007, 8 (Suppl 1):S7 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
The BioPrompt-box: an ontology-based clustering tool for searching in biological databases Claudio Corsi, Paolo Ferragina, Roberto Marangoni BMC Bioinformatics 2007, 8 (Suppl 1):S8 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Gene models from ESTs (GeneModelEST): an application on the Solanum lycopersicum genome Nunzio D'Agostino, Alessandra Traini, Luigi Frusciante, Maria Luisa Chiusano BMC Bioinformatics 2007, 8 (Suppl 1):S9 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Significance analysis of microarray transcript levels in time series experiments Barbara Di Camillo, Gianna Toffolo, Sreekumaran K Nair, Laura J Greenlund, Claudio Cobelli BMC Bioinformatics 2007, 8 (Suppl 1):S10 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
ProCMD: a database and 3D web resource for protein C mutants Pasqualina D'Ursi, Francesca Marino, Andrea Caprera, Luciano Milanesi, Elena M Faioni, Ermanna Rovida BMC Bioinformatics 2007, 8 (Suppl 1):S11 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
On the origin and evolution of biosynthetic pathways: integrating microarray data with structure and organization of the Common Pathway genes Marco Fondi, Matteo Brilli, Renato Fani BMC Bioinformatics 2007, 8 (Suppl 1):S12 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
ESTuber db: an online database for Tuber borchii EST sequences Barbara Lazzari, Andrea Caprera, Cristian Cosentino, Alessandra Stella, Luciano Milanesi, Angelo Viotti BMC Bioinformatics 2007, 8 (Suppl 1):S13 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Statistical analysis of genomic protein family and domain controlled annotations for functional investigation of classified gene lists Marco Masseroli, Elisa Bellistri, Andrea Franceschini, Francesco Pinciroli BMC Bioinformatics 2007, 8 (Suppl 1):S14 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Environment specific substitution tables for thermophilic proteins K Mizuguchi, M Sele, MV Cubellis BMC Bioinformatics 2007, 8 (Suppl 1):S15 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation Nicola Neretti, Daniel Remondini, Marc Tatar, John M Sedivy, Michela Pierini, Dawn Mazzatti, Jonathan Powell, Claudio Franceschi, Gastrone C Castellani BMC Bioinformatics 2007, 8 (Suppl 1):S16 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data Davide Rambaldi, Barbara Felice, Viviane Praz, Philip Bucher, Davide Cittaro, Alessandro Guffanti BMC Bioinformatics 2007, 8 (Suppl 1):S17 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics Dietrich Rebholz-Schuhman, Graham Cameron, Dominic Clark, Erik van Mulligen, Jean-Louis Coatrieux, Eva Del Hoyo Barbolla, Fernando Martin-Sanchez, Luciano Milanesi, Ivan Porro, Francesco Beltrame, Ioannis Tollis, Johan Van der Lei BMC Bioinformatics 2007, 8 (Suppl 1):S18 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Biowep: a workflow enactment portal for bioinformatics applications Paolo Romano, Ezio Bartocci, Guglielmo Bertolini, Flavio De Paoli, Domenico Marra, Giancarlo Mauri, Emanuela Merelli, Luciano Milanesi BMC Bioinformatics 2007, 8 (Suppl 1):S19 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data Elisabetta Sbis BMC Bioinformatics 2007, 8 (Suppl 1):S20 (8 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
BMC Bioinformatics Volumes
29 April, 2006
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, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Antonio Turi, Sabino Liuni, Graziano Pesole, Anna De Grassi, Mariano Francesco Caratozzolo, Anna Maria D'Erchia, Beatriz Navarro, Apollonia Tullo, Cecilia Saccone, Andreas Gisel