Supplements
Editor-in-Chief Melissa Norton, MD
Biology Editor Penelope Webb, PhD
In-house Editor Danielle Burgess PhD
BMC Bioinformatics publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.
Contents of Volume 6 Suppl 4
Italian Society of Bioinformatics (BITS): Annual Meeting 2005
Research articles
from Italian Society of Bioinformatics (BITS): Annual Meeting 2005
Milan, Italy. 17
19 March 2005
Edited by Rita Casadio, Alessandro Guffanti, Manuela Helmer-Citterich, Giancarlo Mauri, Luciano Milanesi, Graziano Pesole, Cecilia Saccone and Giorgio Valle
Introduction
Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society Manuela Helmer-Citterich, Rita Casadio, Alessandro Guffanti, Giancarlo Mauri, Luciano Milanesi, Graziano Pesole, Giorgio Valle, Cecilia Saccone BMC Bioinformatics 2005, 6 (Suppl 4):S1 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Regularized Least Squares Cancer Classifiers from DNA microarray data Nicola Ancona, Rosalia Maglietta, Annarita D'Addabbo, Sabino Liuni, Graziano Pesole BMC Bioinformatics 2005, 6 (Suppl 4):S2 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
A Hybrid Genetic-Neural System for Predicting Protein Secondary Structure Giuliano Armano, Gianmaria Mancosu, Luciano Milanesi, Alessandro Orro, Massimiliano Saba, Eloisa Vargiu BMC Bioinformatics 2005, 6 (Suppl 4):S3 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
HmtDB, a Human Mitochondrial Genomic Resource Based on Variability Studies Supporting Population Genetics and Biomedical Research Marcella Attimonelli, Matteo Accetturo, Monica Santamaria, Daniela Lascaro, Gaetano Scioscia, Graziano Pappad BMC Bioinformatics 2005, 6 (Suppl 4):S4 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Query3d: a new method for high-throughput analysis of functional residues in protein structures Gabriele Ausiello, Allegra Via, Manuela Helmer-Citterich BMC Bioinformatics 2005, 6 (Suppl 4):S5 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
MicroGen: a MIAME compliant web system for microarray experiment information and workflow management Sarah Burgarella, Dario Cattaneo, Francesco Pinciroli, Marco Masseroli BMC Bioinformatics 2005, 6 (Suppl 4):S6 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
An integrated approach of immunogenomics and bioinformatics to identify new Tumor Associated Antigens (TAA) for mammary cancer immunological prevention Federica Cavallo, Annalisa Astolfi, Manuela Iezzi, Francesca Cordero, Pier-Luigi Lollini, Guido Forni, Raffaele Calogero BMC Bioinformatics 2005, 6 (Suppl 4):S7 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Secondary structure assignment that accurately reflects physical and evolutionary characteristics Maria Vittoria Cubellis, Fabien Cailliez, Simon C Lovell BMC Bioinformatics 2005, 6 (Suppl 4):S8 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
ParPEST: a pipeline for EST data analysis based on parallel computing Nunzio D'Agostino, Mario Aversano, Maria Luisa Chiusano BMC Bioinformatics 2005, 6 (Suppl 4):S9 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Modelling the interaction of steroid receptors with endocrine disrupting chemicals Pasqualina D'Ursi, Erika Salvi, Paola Fossa, Luciano Milanesi, Ermanna Rovida BMC Bioinformatics 2005, 6 (Suppl 4):S10 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
A quantization method based on threshold optimization for microarray short time series Barbara Di Camillo, Fatima Sanchez-Cabo, Gianna Toffolo, Sreekumaran K Nair, Zlatko Trajanoski, Claudio Cobelli BMC Bioinformatics 2005, 6 (Suppl 4):S11 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins Piero Fariselli, Pier Luigi Martelli, Rita Casadio BMC Bioinformatics 2005, 6 (Suppl 4):S12 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
A neural strategy for the inference of SH3 domain-peptide interaction specificity Enrico Ferraro, Allegra Via, Gabriele Ausiello, Manuela Helmer-Citterich BMC Bioinformatics 2005, 6 (Suppl 4):S13 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Mining published lists of cancer related microarray experiments: Identification of a gene expression signature having a critical role in cell-cycle control Giacomo Finocchiaro, Francesco Mancuso, Heiko Muller BMC Bioinformatics 2005, 6 (Suppl 4):S14 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
-In silico functional characterization of a double histone fold domain from the Heliothis zea virus 1Claudio Greco, Piercarlo Fantucci, Luca De Gioia BMC Bioinformatics 2005, 6 (Suppl 4):S15 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
ESTree db: a Tool for Peach Functional Genomics Barbara Lazzari, Andrea Caprera, Alberto Vecchietti, Alessandra Stella, Luciano Milanesi, Carlo Pozzi BMC Bioinformatics 2005, 6 (Suppl 4):S16 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Browsing Isolated Population Data Gianmaria Mancosu, Massimiliano Cosso, Francesca Marras, Cesare Cappio Borlino, Giuseppe Ledda, Teresa Manias, Mauro Adamo, Donatella Serra, Paola Melis, Mario Pirastu BMC Bioinformatics 2005, 6 (Suppl 4):S17 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Inherited disorder phenotypes: controlled annotation and statistical analysis for knowledge mining from gene lists Marco Masseroli, Osvaldo Galati, Mauro Manzotti, Karina Gibert, Francesco Pinciroli BMC Bioinformatics 2005, 6 (Suppl 4):S18 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
High performance workflow implementation for protein surface characterization using grid technology Ivan Merelli, Giulia Morra, Daniele D'Agostino, Andrea Clematis, Luciano Milanesi BMC Bioinformatics 2005, 6 (Suppl 4):S19 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research article
Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity Luciano Milanesi, Mauro Petrillo, Leandra Sepe, Angelo Boccia, Nunzio D'Agostino, Myriam Passamano, Salvatore Di Nardo, Gianluca Tasco, Rita Casadio, Giovanni Paolella BMC Bioinformatics 2005, 6 (Suppl 4):S20 (1 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ] [1 comment ]
BMC Bioinformatics Volumes
19 March 2005
, Luigi Russo, Luigi Zanchetta, Mila Tommaseo-Ponzetta