BMC Bioinformatics

Section Editors

Adam Godzik, Sanford-Burnham Medical Research Institute and UCSD
Lawrence Hunter, University of Colorado Denver
Igor Jurisica, Ontario Cancer Institute
Burkhard Morgenstern, University of Gottingen
Alexey Nesvizhskii, University of Michigan
Adam Olshen, University of California, San Francisco
Hanchuan Peng, Howard Hughes Medical Institute
Graziano Pesole, University of Bari
Mihai Pop, University of Maryland

Executive Editor

Kate Rice, BioMed Central

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Articles

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Rapid decoy selection in protein structures

HS-Forest performs rapid, but incomplete, clustering for decoy selection in protein structure prediction, generating multiple independent trees for a consensus result by means of local sensitive hashing.

BMC Bioinformatics 2013, 14:11
3D stitching tool for Teravoxel-sized images

TeraStitcher, a freely available tool, permits retrieval and processing of images generated using approximate tile positions to stitch Teravoxel-sized tiled microscopy images from large amounts of data even on memory limited machines.

BMC Bioinformatics 2012, 13:316
Pattern picking in mass spectra

Identification of overlapping isotope patterns in mass spectrometric data is achieved using non-negative least squares/non-negative least absolute deviation regression, and is able to disentangle complicated overlaps of patterns.

BMC Bioinformatics 2012, 13:291
Software for regulatory interactions and data

Pathway Tools provides a comprehensive environment for integration of genome, metabolome and a range of regulatory knowledge to build, visualize and compute regulatory networks, and currently has curated sets of data for three bacterial species.

BMC Bioinformatics 2012, 13:243
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Comments

SparSNP is now open source at...

Comment on: Abraham et al. BMC Bioinformatics 2013, 13:88
Errors in Table 1. Comparison of common graphical workflow...

Comment on: Dinov et al. BMC Bioinformatics 2013, 12:304
A slight error in Equation 6

Comment on: Moseley BMC Bioinformatics 2012, 11:139

Hot topic

The evolutionary rate of antibacterial drug targets

Gladki A, Kaczanowski S, Szczesny P and Zielenkiewicz P

BMC Bioinformatics 2013, 14:36

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News from the web

02 March 2013: NCIP Adopts New OS License, Migrates Code to GitHub to Simplify caBIG Adoption

01 March 2013: USC Algorithm Helps Researchers Cut NGS Costs by Predicting Needed Sequencing Depth

01 March 2013: Q&A: Foundation Medicine's Eric Neumann on Capturing Knowledge for Clinical Genomics Use

Scope

BMC Bioinformatics is an open access, peer-reviewed journal that considers articles on all aspects of the development, testing and novel application of computational and statistical methods for the modeling and analysis of all kinds of biological data, as well as other areas of computational biology.

It is journal policy to publish work deemed by peer reviewers to be a coherent and sound addition to scientific knowledge and to put less emphasis on interest levels, provided that the research constitutes a useful contribution to the field.

Announcement

BMC Bioinformatics is currently accepting submissions to a thematic issue 'Bioimage Informatics' for the emerging computational field in Bioimaging. Please see the call for papers for more details and how to submit.

Call for papers

BMC Bioinformatics and Journal of Biomedical Semantics are currently accepting submissions to an exciting new article series entitled 'Annotation, Interpretation and Management of Mutations'. Please see the call for papers for more details and how to submit.

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