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Broad Institute of MIT & Harvard 's Articles

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Page 1 of 10

Research article

Dissecting the role of non-coding RNAs in the accumulation of amyloid and tau neuropathologies in Alzheimer’s disease

Ellis Patrick, Sathyapriya Rajagopal, Hon-Kit Andus Wong, Cristin McCabe, Jishu Xu, Anna Tang, Selina H. Imboywa, Julie A. Schneider, Nathalie Pochet, Anna M. Krichevsky, Lori B. Chibnik, David A. Bennett and Philip L. De Jager

Molecular Neurodegeneration 2017 12:51

Published on: 1 July 2017
Comment

Dissecting the human microbiome with single-cell genomics

Andrew C. Tolonen and Ramnik J. Xavier

Genome Medicine 2017 9:56

Published on: 14 June 2017
Research article

High-throughput validation of ceRNA regulatory networks

Hua-Sheng Chiu, María Rodríguez Martínez, Mukesh Bansal, Aravind Subramanian, Todd R. Golub, Xuerui Yang, Pavel Sumazin and Andrea Califano

BMC Genomics 2017 18:418

Published on: 30 May 2017
Research

Artemisinin resistance without pfkelch13 mutations in Plasmodium falciparum isolates from Cambodia

Angana Mukherjee, Selina Bopp, Pamela Magistrado, Wesley Wong, Rachel Daniels, Allison Demas, Stephen Schaffner, Chanaki Amaratunga, Pharath Lim, Mehul Dhorda, Olivo Miotto, Charles Woodrow, Elizabeth A. Ashley, Arjen M. Dondorp, Nicholas J. White, Dyann Wirth…

Malaria Journal 2017 16:195

Published on: 12 May 2017
Research article

Growth and stress response mechanisms underlying post-feeding regenerative organ growth in the Burmese python

Audra L. Andrew, Blair W. Perry, Daren C. Card, Drew R. Schield, Robert P. Ruggiero, Suzanne E. McGaugh, Amit Choudhary, Stephen M. Secor and Todd A. Castoe

BMC Genomics 2017 18:338

Published on: 2 May 2017
Research

Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance

Gustavo C. Cerqueira, Ian H. Cheeseman, Steve F. Schaffner, Shalini Nair, Marina McDew-White, Aung Pyae Phyo, Elizabeth A. Ashley, Alexandre Melnikov, Peter Rogov, Bruce W. Birren, François Nosten, Timothy J. C. Anderson and Daniel E. Neafsey

Genome Biology 2017 18:78

Published on: 28 April 2017
Case report

Case report of Plasmodium ovale curtisi malaria in Sri Lanka: relevance for the maintenance of elimination status

Sharmini Gunawardena, Rachel F. Daniels, Thishan C. Yahathugoda, Mirani V. Weerasooriya, Katelyn Durfee, Sarah K. Volkman, Dyann F. Wirth and Nadira D. Karunaweera

BMC Infectious Diseases 2017 17:307

Published on: 24 April 2017
Research

High resolution melting: a useful field-deployable method to measure dhfr and dhps drug resistance in both highly and lowly endemic Plasmodium populations

Yaye Dié Ndiaye, Cyrille K. Diédhiou, Amy K. Bei, Baba Dieye, Aminata Mbaye, Nasserdine Papa Mze, Rachel F. Daniels, Ibrahima M. Ndiaye, Awa B. Déme, Amy Gaye, Mouhamad Sy, Tolla Ndiaye, Aida S. Badiane, Mouhamadou Ndiaye, Zul Premji, Dyann F. Wirth…

Malaria Journal 2017 16:153

Published on: 19 April 2017
Research article

Genetic analysis of impaired trimethylamine metabolism using whole exome sequencing

Yiran Guo, Liang-Dar Hwang, Jiankang Li, Jason Eades, Chung Wen Yu, Corrine Mansfield, Alexis Burdick-Will, Xiao Chang, Yulan Chen, Fujiko F. Duke, Jianguo Zhang, Steven Fakharzadeh, Paul Fennessey, Brendan J. Keating, Hui Jiang, Hakon Hakonarson…

BMC Medical Genetics 2017 18:11

Published on: 15 February 2017
Research

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

Ronald P. de Vries, Robert Riley, Ad Wiebenga, Guillermo Aguilar-Osorio, Sotiris Amillis, Cristiane Akemi Uchima, Gregor Anderluh, Mojtaba Asadollahi, Marion Askin, Kerrie Barry, Evy Battaglia, Özgür Bayram, Tiziano Benocci, Susanna A. Braus-Stromeyer, Camila Caldana, David Cánovas…

Genome Biology 2017 18:28

Published on: 14 February 2017
Study protocol

ASPirin Intervention for the REDuction of colorectal cancer risk (ASPIRED): a study protocol for a randomized controlled trial

David A. Drew, Samantha M. Chin, Katherine K. Gilpin, Melanie Parziale, Emily Pond, Madeline M. Schuck, Kathleen Stewart, Meaghan Flagg, Crystal A. Rawlings, Vadim Backman, Peter J. Carolan, Daniel C. Chung, Francis P. Colizzo, Matthew Freedman, Manish Gala, John J. Garber…

Trials 2017 18:50

Published on: 1 February 2017
Editorial

Human disease genomics: from variants to biology

Mark I. McCarthy and Daniel G. MacArthur

Genome Biology 2017 18:20

Published on: 30 January 2017
Research

Genetic relatedness analysis reveals the cotransmission of genetically related Plasmodium falciparum parasites in Thiès, Senegal

Wesley Wong, Allison D. Griggs, Rachel F. Daniels, Stephen F. Schaffner, Daouda Ndiaye, Amy K. Bei, Awa B. Deme, Bronwyn MacInnis, Sarah K. Volkman, Daniel L. Hartl, Daniel E. Neafsey and Dyann F. Wirth

Genome Medicine 2017 9:5

Published on: 24 January 2017
Research

Whole genome sequencing of Plasmodium falciparum from dried blood spots using selective whole genome amplification

Samuel O. Oyola, Cristina V. Ariani, William L. Hamilton, Mihir Kekre, Lucas N. Amenga-Etego, Anita Ghansah, Gavin G. Rutledge, Seth Redmond, Magnus Manske, Dushyanth Jyothi, Chris G. Jacob, Thomas D. Otto, Kirk Rockett, Chris I. Newbold, Matthew Berriman and Dominic P. Kwiatkowski

Malaria Journal 2016 15:597

Published on: 20 December 2016
Methodology

Targeted bisulfite sequencing of the dynamic DNA methylome

Michael J. Ziller, Elena K. Stamenova, Hongcang Gu, Andreas Gnirke and Alexander Meissner

Epigenetics & Chromatin 2016 9:55

Published on: 3 December 2016
Research

Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures

Yasin Şenbabaoğlu, Ron S. Gejman, Andrew G. Winer, Ming Liu, Eliezer M. Van Allen, Guillermo de Velasco, Diana Miao, Irina Ostrovnaya, Esther Drill, Augustin Luna, Nils Weinhold, William Lee, Brandon J. Manley, Danny N. Khalil, Samuel D. Kaffenberger, Yingbei Chen…

Genome Biology 2016 17:231

Published on: 17 November 2016

The Erratum to this article has been published in Genome Biology 2017 18:46
Methodology

Systematic comparison of monoclonal versus polyclonal antibodies for mapping histone modifications by ChIP-seq

Michele Busby, Catherine Xue, Catherine Li, Yossi Farjoun, Elizabeth Gienger, Ido Yofe, Adrianne Gladden, Charles B. Epstein, Evan M. Cornett, Scott B. Rothbart, Chad Nusbaum and Alon Goren

Epigenetics & Chromatin 2016 9:49

Published on: 4 November 2016
Review

Technological considerations for genome-guided diagnosis and management of cancer

Niall J. Lennon, Viktor A. Adalsteinsson and Stacey B. Gabriel

Genome Medicine 2016 8:112

Published on: 26 October 2016
Research

Fast type I interferon response protects astrocytes from flavivirus infection and virus-induced cytopathic effects

Richard Lindqvist, Filip Mundt, Jonathan D. Gilthorpe, Silke Wölfel, Nelson O. Gekara, Andrea Kröger and Anna K. Överby

Journal of Neuroinflammation 2016 13:277

Published on: 24 October 2016
Research article

Comparative genomics of Clostridium bolteae and Clostridium clostridioforme reveals species-specific genomic properties and numerous putative antibiotic resistance determinants

Pierre Dehoux, Jean Christophe Marvaud, Amr Abouelleil, Ashlee M. Earl, Thierry Lambert and Catherine Dauga

BMC Genomics 2016 17:819

Published on: 21 October 2016

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Broad Institute of MIT & Harvard

Broad Institute of MIT & Harvard 's Articles

Dissecting the role of non-coding RNAs in the accumulation of amyloid and tau neuropathologies in Alzheimer’s disease

Dissecting the human microbiome with single-cell genomics

High-throughput validation of ceRNA regulatory networks

Artemisinin resistance without pfkelch13 mutations in Plasmodium falciparum isolates from Cambodia

Growth and stress response mechanisms underlying post-feeding regenerative organ growth in the Burmese python

Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance

Case report of Plasmodium ovale curtisi malaria in Sri Lanka: relevance for the maintenance of elimination status

High resolution melting: a useful field-deployable method to measure dhfr and dhps drug resistance in both highly and lowly endemic Plasmodium populations

Genetic analysis of impaired trimethylamine metabolism using whole exome sequencing

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

ASPirin Intervention for the REDuction of colorectal cancer risk (ASPIRED): a study protocol for a randomized controlled trial

Human disease genomics: from variants to biology

Genetic relatedness analysis reveals the cotransmission of genetically related Plasmodium falciparum parasites in Thiès, Senegal

Whole genome sequencing of Plasmodium falciparum from dried blood spots using selective whole genome amplification

Targeted bisulfite sequencing of the dynamic DNA methylome

Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures

Systematic comparison of monoclonal versus polyclonal antibodies for mapping histone modifications by ChIP-seq

Technological considerations for genome-guided diagnosis and management of cancer

Fast type I interferon response protects astrocytes from flavivirus infection and virus-induced cytopathic effects

Comparative genomics of Clostridium bolteae and Clostridium clostridioforme reveals species-specific genomic properties and numerous putative antibiotic resistance determinants

Find the right journal

Looking for a suitable journal?

Have a manuscript ready?

Publish Your Manuscript