Table 2 |
||||||
| Comparison of edge distribution from control set and GREMLIN | ||||||
| Categories | Control set (Null Distribution) | GREMLIN (at penaltyλ = 38) | GREMLIN > Null | GREMLIN < Null | ||
| Total edges | % of edges | Total edges | % of edges | p value | p value | |
| EC-EC | 4095 | 6.78 | 169 | 23.80 | 0 | 1 |
| EC-TM | 14833 | 24.57 | 153 | 21.55 | 0.97 | 0.03 |
| EC-IC | 8554 | 14.17 | 56 | 7.89 | 1 | 0 |
| TM-TM | 13203 | 21.87 | 145 | 20.42 | 0.84 | 0.16 |
| IC-TM | 15322 | 25.38 | 81 | 11.41 | 1 | 0 |
| IC-IC | 4371 | 7.24 | 106 | 14.93 | 0 | 1 |
| TOTAL | 60378 | 100.00 | 710 | 100.00 | ||
| EC-RT | 2125 | 3.52 | 114 | 16.06 | 0 | 1 |
| RT-TM | 3600 | 5.96 | 98 | 13.80 | 0 | 1 |
| IC-RT | 2350 | 3.89 | 67 | 9.44 | 0 | 1 |
| RT-RT | 300 | 0.50 | 51 | 7.18 | 0 | 1 |
| SUB-TOTAL | 8375 | 13.87 | 330 | 46.48 | ||
Moitra et al. BMC Biophysics 2012 5:13 doi:10.1186/2046-1682-5-13
