Additional file 8.
Brownmove particle definition file for the agglomeration-with-network-analysis example simulation. As sketched in Figure 10 A the particle consists of two displaced van-der-Waals spheres with different "colour" indices. Together with the parameter definitions in the simulation setup file (see additional file 9) the spheres with colour 0 can stick to each other while all other pairs have purely repulsive interactions. For more details see the comments in this (ASCII text) file.
Format: BDEF Size: 1KB Download file
Geyer BMC Biophysics 2011 4:7 doi:10.1186/2046-1682-4-7