Table 2

List of transmembrane (TM) and non-transmembrane (non-TM) protein chains in complex with lipids

Proteincodea

Protein name

Lipid codeb

Total contactsc

Chainlength


(a) Transmembrane (TM) protein chains

1gzm_A

Rhodopsin

PEF

5

329

1kqg_B

Formate dehydrogenase-N (Fdn-N)

CDL

7

289

1kqg_C

Formate dehydrogenase-N (Fdn-N)

CDL

5

216

1m56_D

Cytochrome c oxidase

PEH

16

42

1nen_C

Succinate dehydrogenase (SQR)

CDN, EPH

19

129

1nen_D

Succinate dehydrogenase (SQR)

CDN

9

113

1pp9_Q

Cytochrome bc1 complex

CDL, PEE

15

241

1pp9_T

Cytochrome bc1 complex

CDL, PEE

12

76

1vf5_D

Cytochrome b6f complex

OPC

5

168

1vf5_N

Cytochrome b6f complex

OPC

6

202

1x0i_1

Bacteriorhodopsin (BR)

L3P

14

215

1xio_A

Sensory rhodopsin (SR)

PEE

32

217

1zoy_D

Succinate:ubiquinone oxidoreductase (SQR)

EPH

10

102

2b6o_A

Aquaporin-0 (AQP0)

MC3

27

235

2bl2_I

Vacuolar-type (V-type) sodium ion-pumping adenosine triphosphatase (Na+-ATPase)

LHG

14

156

2brd_A

Bacteriorhodopsin (BR)

DPG

47

222

2c3e_A

ADP/ATP translocase 1

CDL

40

293

2e75_B

Cytochrome b6f complex

OPC

13

160

2e76_F

Cytochrome b6f complex

OPC

5

32

2eau_A

Ca2+-ATPase

PTY

19

994

2eim_W

Cytochrome c oxidase

CDL

5

58

2ein_O

Cytochrome c oxidase

CDL, PEK, PSC

18

226

2h89_C

Succinate:ubiquinone oxidoreductase (SQR)

PEE

5

139

2hg3_H

Reaction center

CDL, PC9

14

240

2hh1_L

Reaction center

CDL, PC7, PC9

10

281

2hhk_M

Reaction center

CDL, PGK, PGT

23

302

2irv_B

Rhomboid protease (GlpG)

PGV

11

179

2r9r_B

Voltage-dependent K+ (Kv) channel

PGW

35

386

2wll_B

Potassium Channel (Kir)

PLC

6

266

2z73_B

Rhodopsin

PC1

5

347

3a7k_A

Halorhodopsin (HR)

L1P, L3P

33

259

3abl_N

Cytochrome c oxidase

CDL, PEK, PGV, PSC

29

513

3abl_P

Cytochrome c oxidase

CDL, PEK, PGV

85

259

3abm_G

Cytochrome c oxidase

CDL, PEK, PGV

25

83

3ag4_Z

Cytochrome c oxidase

PGV

5

43

3bz2_A

Photosystem II (PSII)

LHG

6

335

3bz2_C

Photosystem II (PSII)

LHG

5

447

3bz2_D

Photosystem II (PSII)

LHG

6

340

3cx5_C

Cytochrome bc1 complex

6PH, 7PH, 8PE, 9PE, CN3, CN5

42

385

3ddl_B

Xanthorhodopsin (XR)

PCW, PX4

6

250

3eam_C

Bacterial ligand-gated ion channel homologue (GLIC)

PC1

23

311

3egw_C

Nitrate Reductase A (NarGHI)

AGA

10

224

3emn_X

Voltage-dependent anion channel (VDAC) 1

MC3

7

283

3h1j_R

Cytochrome bc1 complex

PEE, PLC

11

196

3h1j_W

Cytochrome bc1 complex

PEE, PLC

9

59

(b) Non-transmembrane (non-TM) protein chains

1bp1_A

Bactericidal/permeability-increasing protein (BPI)

PC1

47

456

1bwo_A

Nonspecific lipid transfer protein (ns-LTP1)

LPC

20

90

1cqx_B

Flavohemoglobin

DGG

15

403

1l8s_B

Phospholipase A2 (PLA2)

LPE

11

124

1lsh_A

Lipovitellin (LV-1N, LV-1C)

PLD

53

954

1lsh_B

Lipovitellin (LV-2)

PLD

9

174

1s9a_B

4-chlorocatechol 1

HGP

13

256

1tuk_A

Type 2 nonspecific lipid transfer protein (ns-LTP)

PGM

11

67

1un8_A

Dihydroxyacetone kinase

MYY

15

542

1y9t_A

Lipoprotein MxiM

HHG

7

110

1yuc_B

Nuclear receptor liver receptor homolog 1 (LRH-1)

EPH

22

240

2azq_A

Catechol 1

PCF

9

309

2e2x_B

Sec14 homology module of neurofibromin

PEV

22

250

2obd_A

Cholesteryl ester transfer protein (CETP)

PCW

41

472

2qgu_A

Phospholipid-binding protein

PEF

12

179

2rak_A

PX-BAR membrane-remodeling unit of sorting nexin 9 (SNX9)

PIB

5

382

2rkn_A

Defective in induced resistance 1 protein (DIR1)

LP3

22

77

2vwa_B

Soluble domain of up-regulated in infective sporozoites 3 (UIS3)

PTY

12

100

2z0p_D

PH domain of Bruton's tyrosine kinase

4PT

13

161

2ze9_A

Phospholipase D

PD7

10

504

3a7c_A

Extracellular domain of Toll-like receptor 2 (TLR2)

PDK

13

549

3bib_X

T cell immunoglobulin mucin protein 4 (TIM-4)

PSF

9

109

3cx9_A

Human serum albumin (HSA)

LPX

17

582

3e3c_B

Global regulator of LEE repressor (GrlR)

HHG

15

118

3k7t_A

6-hydroxy-L-nicotine oxidase

GP7

17

425

3mdb_C

Arf-GAP with dual PH domain-containing protein 1

IP9

9

365

3mtx_B

Myeloid differentiation factor 1 (MD-1)

PGT

18

140


a Protein ID and chain ID.

b HET IDs of all contacting lipids in the complex.

c Total number of residues with lipid contacts.

Morita et al. BMC Biophysics 2011 4:21   doi:10.1186/2046-1682-4-21

Open Data