Table 2

Probe sequences

loop position

loop length

Probe sequence

length (bases)


PM Probe

3'-TTCAATACTACTCATAATTACCAACAACATTAC-5'

33


7

1

3'-TTCAATATCTACTCATAATTACCAACAACATTAC-5'

34


7

2

3'-TTCAATATTCTACTCATAATTACCAACAACATTAC-5'

35


.

.

.

.

.

.

.

.

3'TTCAATATT..CTACTCATAATTACCAACAACATTAC-5'

.


7

13

3'-TTCAATATTTTTTTTTTTTTCTACTCATAATTACCAACAACATTAC-5'

46


8

1

3'-TTCAATACTTACTCATAATTACCAACAACATTAC-5'

34


8

2

3'-TTCAATACTTTACTCATAATTACCAACAACATTAC-5'

35


.

.

.

.

.

.

.

.

.


26

13

3'-TTCAATACTACTCATAATTACCAACATTTTTTTTTTTTTACATTAC-5'

46


Synthesized probe sequences (features) on the DNA microarray surface.

Bold letters highlight the additional thymine bases. Altogether, there are 261 different features.

Trapp et al. BMC Biophysics 2011 4:20   doi:10.1186/2046-1682-4-20

Open Data