Table 4

Atoms used in the calculation of the contact measure

Residue

Set of atoms (AI)


Pro

Cβ, Cγ, Cδ

Tyr

Cγ, Cδ1, Cδ2, Cϵ1, Cϵ2, Cζ

Val

Cβ, Cγ1, Cγ2

Ile

Cβ, Cγ1, Cγ2, Cδ

Leu

Cβ, Cγ, Cδ1, Cδ2

Met

Cβ, Cγ, Sδ, Cϵ

Phe

Cγ, Cδ1, Cδ2, Cϵ1, Cϵ2, Cζ

Trp

Cγ, Cδ1, Cδ2, Cϵ3, Cζ3, Cη2

Arg

Cβ, Cγ

Lys

Cβ, Cγ, Cδ


Irbäck et al. PMC Biophysics 2009 2:2   doi:10.1186/1757-5036-2-2

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