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Two common profiles exist for genomic oligonucleotide frequencies

Shang-Hong Zhang* and Lei Wang

Author Affiliations

Key Laboratory of Gene Engineering of Ministry of Education, and Biotechnology Research Center, Sun Yat-sen University, Guangzhou, 510275, China

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BMC Research Notes 2012, 5:639  doi:10.1186/1756-0500-5-639

Published: 17 November 2012

Additional files

Additional file 1:

List of genomes and sequences analyzed. Excel spreadsheets containing the list of prokaryotes, eukaryotes, mitochondria, chloroplasts, plasmids, viruses and phages studied.

Format: XLS Size: 357KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

Distribution of prokaryotic genomes for common class 1 and common class 2 in terms of oligonucleotide frequency profiles. Excel spreadsheet showing the distribution of prokaryotic genomes for the two common classes.

Format: XLS Size: 106KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3:

Details of the trinucleotide frequency profiles of prokaryotic genomes. Excel spreadsheets showing the trinucleotide frequency profiles of prokaryotic genomes for common class 1 (common profile 1), common class 2 (common profile 2), and an example of the minority class.

Format: XLS Size: 739KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 4:

Details of the trinucleotide frequency profiles of random sequences. Excel spreadsheets showing the trinucleotide frequency profiles of random sequences corresponding to common profile 1 or to common profile 2.

Format: XLS Size: 1.4MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 5:

Details of the trinucleotide frequency profiles of eukaryotic genomes. Excel spreadsheets showing the trinucleotide frequency profiles of human, mouse, Ashbya gossypii, and Ostreococcus lucimarinus chromosomes (chromosome segments).

Format: XLS Size: 130KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 6:

Details of the trinucleotide frequency profiles of mitochondrial, chloroplast, virus and phage genomes, and plasmids. Excel spreadsheets showing the trinucleotide frequency profiles of these genetic systems in regard to common classes.

Format: XLS Size: 2MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 7:

“Profile correlation” and “profile similarity.” Excel spreadsheet showing the data and figures for the comparison of mononucleotide frequency profiles and that of dinucleotide frequency profiles.

Format: XLS Size: 42KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data