Table 1

Different tissue specific Unigene libraries employed in DDD
S. No. Tissue types No. of EST libraries dbEST identification number Respective Number of ESTs
1 Adipose 2 10983, 16445 8299, 1646
2 Adrenal gland 4 6791, 6792, 16377, 18302 4582, 1425, 2756, 10026
3 Tongue 4 12982, 18362, 18389, 18479 1116, 7730, 23564, 7420
4 Bladder 1 18307 8220
5 Blood 6 7037, 7038, 8975, 11923, 6824, 9724 1524, 1721, 4215, 6553, 7241, 9352
6 Bone 3 1124, 821, 16433 6209, 1337, 2615
7 Bone marrow 8 6975, 6976, 15949, 15950, 16412, 931, 10409, 10410 2459, 3424, 1379, 2707, 3623, 5336, 1798, 5231
8 Brain 36 1749, 16376, 16390, 18317, 18318, 18352, 18353, 18415, 18466, 14591, 14592, 186, 17380, 742, 16380, 18310, 18311, 16382, 16383, 18322, 1918, 5655, 6811, 6812, 8570, 19377, 14298, 13711, 13053, 536, 7209, 16384, 18319 1600, 1361, 13592, 2579, 15152, 43177, 24735, 23791, 6112, 31569, 15839, 1461, 1334, 18126, 5838, 4298, 3364, 41751, 40272, 2802, 3192, 16612, 7369, 8197, 2790, 3145, 19115, 44785, 1609, 7033, 3931, 4897, 5194, 2565, 25752
9 Eye 26 13915, 17747, 7316, 7315, 10273, 10287, 13901, 19465, 10274, 10281, 10280, 10288, 10279, 10284, 19471, 10285, 10286, 12093, 302, 303, 433, 10966, 10282, 10283, 16572, 13902 3739, 4253, 1836, 1294, 4005, 3543, 2785, 1334, 1595, 1479, 1115, 6010, 1469, 6719, 3043, 8344, 1199, 7816, 9190, 1732, 2174, 4531, 6279, 1185, 6097, 2946
10 Heart 8 15951, 16399, 18354, 18410, 16421, 18503, 16379, 16381 5307, 3284, 2667, 8670, 4000, 8502, 7220, 4698
11 Stomach 12 10299, 10301, 10302, 10305, 10306, 10310, 10311, 10324, 10325, 18488, 18529, 16432 1793, 2409, 1453, 2790, 1692, 1984, 6125, 5913, 1422, 8604, 2574, 3137
12 Testis 5 1752, 16441, 18476, 18517, 19376 6624, 2983, 46964, 44057, 40315
13 Thalamus 3 16437, 18348, 18349 3154, 29651, 23010
14 Thymus 6 16440, 18518, 18519, 18520, 13049, 18375 2365, 1044, 31967, 37541, 3477, 15983
15 Thyroid 3 889, 16408, 7004 1357, 4827, 3342
16 Breast 4 894, 895, 18305, 18475 1786, 6346, 2538, 8256
17 Cartilage 2 8936, 8940 4310, 3858
18 Cervix 2 18425, 18506 2674, 2619
19 Ear 2 371, 18222 12666, 3396
20 Intestine 13 840, 841, 842, 882, 16385, 18350, 18489, 16387, 16400, 17427, 18473, 16425, 18486 1499, 1704, 1759, 11996, 1817, 8191, 2619, 1351, 5536, 8199, 16855, 3403, 2545
21 Epidermis 4 20865, 21612, 7269, 21098 1627, 13186, 10681, 1135
22 Lung 11 10395, 16406, 16413, 16438, 18355, 18363, 18521, 10398, 11912, 18522, 18537 12545, 2448, 6839, 3327, 2565, 16156, 2677, 11510, 15695, 32590, 19278
23 Liver 11 1365, 12531, 12532, 12535, 12549, 12550, 13859, 16392, 18416, 18525, 18893 2302, 1607, 2315, 1136, 2425, 1561, 7537, 6856, 6550, 8424, 31921,
24 Mammary gland 3 6982, 16420, 16436 4561, 3502, 3371
25 Lymph 8 2709, 2710, 2711, 3718, 3719, 3720, 10312, 8613 3434, 3963, 1000, 9867, 1556, 1828, 7590, 1949
26 Teeth 1 12639 1576
27 Medulla 1 9725 9919
28 Muscle 4 530, 16391, 45, 18501 4271, 2154, 2485, 8276
29 Ovary 7 887, 6998, 18421, 18527, 5444, 12637, 12638 2341, 3678, 2300, 2543, 10294, 1050, 1031
30 Nose 2 358, 13908 1702, 24528
31 Placenta 14 13037, 16442, 507, 740, 6999, 10403, 10404, 10405, 10424, 10425, 16422, 17682, 18468, 18484, 13000 11885, 3501, 1370, 1172, 20941, 1862, 1166, 4260, 4517, 1271, 1529, 1032, 16852, 15843, 7344
32 Pancreas 6 16423, 422, 16960, 8840, 3884, 9821 4308, 1799, 13791, 60665, 1234, 17183
33 Prostate 8 888, 17392, 18469, 19880, 16424, 924, 928 1014, 1283, 16483, 41945, 2355, 7609, 1114, 1051
34 Uterus 6 1753, 16443, 18523, 18531, 18544, 12528 1645, 5121, 30124, 2486, 19168, 3510
35 Spleen 2 16431, 18474 2717, 33972
36 Salivary gland 1 16430 2336
37 Kidney 7 16393, 16395, 16410, 18374, 18377, 18524, 16429 5486, 5150, 3565, 17079, 2561, 15730, 1170
37 Pituitary 4 6828, 6829, 13019, 13737 3481, 1444, 7327, 1677
38 immune cells 6 1317, 17555, 17556, 8892, 12072, 12798 11447, 15272, 13685, 6112, 9223, 4548
39 Hair 4 21096, 21100, 21099, 21101 1269, 1288, 1298, 1543
40 Alimentary canal 2 18496, 18418 8371, 2586
41 Cancerous lung 8 1533, 10419, 537, 914, 14132, 14133, 14134, 14135 1377, 4401, 4173, 1850, 4365, 2121, 2847, 1560

Differentially expressed normal lung tissue specific genes (DDD1) were identified from UniGene libraries representing 39 human normal tissues (251 libraries, 1903301 ESTs, S. No. 1–21, 23–40) and counterpart normal lung tissue (11 libraries, 125630 ESTs, S. No. 22 only). Differentially expressed lung tissue specific genes (DDD2) were identified from UniGene libraries representing lung cancer libraries (8 libraries, 22694 ESTs, S. No. 41 only) and counterpart normal lung tissue (11 libraries, 125630 ESTs, S. No. 22 only).

Srivastava et al.

Srivastava et al. BMC Research Notes 2012 5:617   doi:10.1186/1756-0500-5-617

Open Data