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Open Access Technical Note

Phytohormone signaling pathway analysis method for comparing hormone responses in plant-pest interactions

Matthew E Studham1 and Gustavo C MacIntosh2*

Author Affiliations

1 Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA, 50011, USA

2 Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA, 50011, USA

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BMC Research Notes 2012, 5:392  doi:10.1186/1756-0500-5-392

Published: 31 July 2012

Additional files

Additional file 1:

List of genes used to generate the hormone pathway scores. This spreadsheet shows the genes used to generate the score for each hormone pathway and the ID of the Affymetrix chip probes corresponding to each gene.

Format: XLS Size: 334KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

Salicylic acid pathway activity in Asian soybean rust study. This spreadsheet shows the changes in transcript accumulation for all SA-related genes from the day 1 and day 7 time points from the Asian soybean rust experiment. A summary also shows a breakdown of the pathway score into scores for each role.

Format: XLS Size: 356KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3:

Salicylic acid pathway activity in soybean cyst nematode study. This spreadsheet shows the changes in transcript accumulation for all SA-related genes from all time points from the soybean cyst nematode experiment. A summary also shows a breakdown of the pathway score into scores for each role.

Format: XLS Size: 211KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data