Table 1

Identified LRLD-SNP pairs and LDGIs (withr2≥0.8)
Population # Individuals # LRLD-SNP pairs # Affected SNPs # LDGIs # Affected genes
PLINK (P< 0.01)
Phase II
 CEU 30 66343 44756 23425 14444
Phase III
 CEU cluster 1 27 34940 28817 18569 11644
 CEU cluster 2 40 30353 28082 15333 11308
 CHD cluster 1 22 44513 29109 24675 11934
 CHD cluster 2 31 30981 27563 15425 11161
 JPT + CHB cluster 1 28 34672 28024 18212 11401
 JPT + CHB cluster 2 22 48626 29360 29751 12014
 LWK 23 42305 23398 35808 10545
 MKK cluster 1 28 28924 22740 21185 10056
 MKK cluster 2 24 54795 25086 47884 11203
 MKK cluster 3 21 98150 27043 89007 11952
 MKK cluster 4 22 63718 25598 53623 11465
 YRI cluster 1 29 19116 20874 13011 9246
 YRI cluster 2 28 22127 21138 16279 9390
PLINK (P< 0.001)
Phase II
 CEU 48 61699 43945 21112 14181
 JPT + CHB 20 117251 44754 61435 14792
 YRI cluster 1 22 86494 38786 65698 13775
 YRI cluster 2 21 98239 39389 75825 13950
Phase III
 ASW 25 18880 21631 11922 9432
 CEU cluster 1 62 29924 27834 14997 11208
 CEU cluster 2 41 30586 27967 15302 11269
 CHD cluster 1 33 31456 27684 15283 11224
 CHD cluster 2 21 31931 27598 15821 11215
 CHI cluster 1 23 48723 30147 29355 12304
 CHI cluster 2 21 56926 30705 37185 12543
 JPT+CHB cluster 1 28 34509 28021 19004 11404
 JPT+CHB cluster 2 30 33894 28111 17153 11424
 JPT+CHB cluster 3 27 36917 28193 19958 11495
 JPT+CHB cluster 4 23 44475 29077 25505 11928
 JPT+CHB cluster 5 61 32011 27861 15491 11229
 LWK cluster 1 21 61580 24684 54472 11194
 LWK cluster 2 33 15850 19800 10436 8729
 MEX 25 36330 29249 22032 11998
 MKK cluster 1 41 17272 20819 10688 8997
 MKK cluster 2 26 30057 22480 24739 10124
 MKK cluster 3 25 52057 25081 44570 11104
 MKK cluster 4 27 36459 23314 28450 10368
 MKK cluster 5 24 41993 24359 33284 10779
 TSI cluster 1 32 31021 28490 16191 11517
 TSI cluster 2 30 32289 28501 16722 11535
 YRI cluster 1 31 18261 20636 12029 9185
 YRI cluster 2 37 15825 19577 9889 8602
 YRI cluster 3 22 45628 23996 39632 10846
Sum 801340 94876 646203 21240

Wang et al.

Wang et al. BMC Research Notes 2012 5:212   doi:10.1186/1756-0500-5-212

Open Data