Open Access Data Note

A DIGE study on the effects of salbutamol on the rat muscle proteome - an exemplar of best practice for data sharing in proteomics

Jenna Kenyani1, J Alberto Medina-Aunon2, Salvador Martinez-Bartolomé2, Juan-Pablo Albar2, Jonathan M Wastling1 and Andrew R Jones3*

Author Affiliations

1 Institute of Infection and Global Health, University of Liverpool, Crown Street, Liverpool, UK

2 Spanish Institute for Proteomics (ProteoRed), Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, Madrid, Spain

3 Institute of Integrative Biology, University of Liverpool, Biosciences Building, Crown Street, Liverpool, UK

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BMC Research Notes 2011, 4:86  doi:10.1186/1756-0500-4-86

Published: 28 March 2011

Additional files

Additional file 1:

Supplementary Methods. The materials and methods from this study

Format: DOC Size: 34KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional file 2:

Example mapping file for the PRIDESpotMapper. The csv file can be opened, for example, in spreadsheet software. The file contains information for mapping Mascot dat files to spot coordinates on gel images, and is used to create the final PRIDE XML file.

Format: CSV Size: 6KB Download file

Open Data

Additional file 3:

Proteins with changed abundance at 24 h post-treatment. A summary file containing the set of proteins that had modulated abundance, as detected by DIGE, at 24 h post-treatment with salbutamol.

Format: XLS Size: 33KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 4:

Proteins with changed abundance at 96 h post-treatment. A summary file containing the set of proteins that had modulated abundance, as detected by DIGE, at 96 h post-treatment with salbutamol.

Format: XLS Size: 619KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 5:

Clusters of functional annotations for proteins at 24 h post-treatment. The output of clustering functional annotations produced by DAVID, on the protein set at 24 h post-treatment

Format: XLS Size: 44KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 6:

Clusters of functional annotations for proteins at 96 h post-treatment. The output of clustering functional annotations produced by DAVID, on the protein set at 96 h post-treatment

Format: XLS Size: 139KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data