Table 1

Average running times on the full dataset

Sampling rate

0.25

0.75

1


Running time for 10 repetitions

00:00:04

00:00:07

00:00:11

Running time for 100 repetitions

00:00:54

00:03:30

00:04:46

Running time for 1000 repetitions

00:40:15

03:09:14

05:09:52


The full dataset contained 26,803 protein pairs including 105 known in the literature. Times were averaged over two runs and were recorded on an AMD Opteron (64 bits, 2.3 GHz) processor-based computer.

Fontaine et al. BMC Research Notes 2011 4:57   doi:10.1186/1756-0500-4-57

Open Data