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Analysing time course microarray data using Bioconductor: a case study using yeast2 Affymetrix arrays

Colin S Gillespie12*, Guiyuan Lei12, Richard J Boys12, Amanda Greenall23 and Darren J Wilkinson12

Author Affiliations

1 School of Mathematics & Statistics, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK

2 Centre for Integrated Systems Biology of Ageing and Nutrition (CISBAN), Newcastle University, UK

3 Institute for Ageing and Health, Newcastle University, Campus for Ageing and Vitality, Newcastle upon Tyne, NE4 5PL, UK

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BMC Research Notes 2010, 3:81  doi:10.1186/1756-0500-3-81

Published: 19 March 2010

Additional files

Additional file 1:

Additional R commands and analysis. 1. R commands for extracting S. cerevisiae ids, removing unwanted probesets and converting probesets to genes. 2. R commands for genetic regulatory network inference. 3. A list of R packages used in this manuscript. 4. Additional figures.

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