Table 2 |
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|
Genes Involved in strain-specific insertions. |
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|
Position |
Size |
Genes Involved |
|
|
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|
H37Rv |
||
|
|
||
|
3551227–3552586 |
1359 |
Intergenic region between Rv3185 (Probable transposase) and Rv3188 (Hypothetical protein) |
|
|
||
|
H37Ra |
||
|
|
||
|
13627–14986 |
1359 |
Insertion of the IS6110 element between Rv0010c (Probable conserved membrane protein) and Rv0011c (Hypothetical protein) |
|
1989343–1990797 |
1437 |
Insertion of the IS6110 element on the ipl locus |
|
|
||
|
CDC1551 |
||
|
|
||
|
804474–804691 |
217 |
Intergenic region between rplW (50S ribosomal protein L23) and rplB (50S ribosomal protein L2) |
|
2341782–2341840 |
58 |
MT2144 (Hypothetical protein) |
|
|
||
|
F11 |
||
|
|
||
|
934662–936021 |
1359 |
IS6110 insertion in intergenic region between hypothetical proteins TBFG_10851 and TBFG_10853 |
|
1945992–1947351 |
1359 |
IS6110 insertion in Rv1724c (Hypothetical protein) |
|
1992354–1993713 |
1359 |
IS6110 insertion in cut1 (Probable cutinase) |
|
1997360–1998719 |
1359 |
IS6110 insertion in intergenic region between wag22 (PE-PGRS) and Rv1760 (Hypothetical protein) |
|
2004182–2005541 |
1359 |
IS6110 insertion in intergenic region between hypothetical proteins Rv1765c and Rv1766 |
|
2017862–2019221 |
1359 |
IS6110 insertion in cyp144 (Cytochome P450) |
|
2270442–2271801 |
1359 |
IS6110 insertion in Rv2015c (Hypothetical protein) |
|
2349289–2350648 |
1359 |
Intergenic region between Rv2077c (Possible conserved transmembrane protein) – Rv2078 (Hypothetical protein) |
|
2697325–2698684 |
1359 |
IS6110 insertion in Rv2390c (Hypothetical protein) |
|
3492136–3493495 |
1359 |
IS6110 insertion in Rv3113 (Probable phosphatase) |
|
3564263–3565622 |
1359 |
IS6110 insertion in intergenic region between Rv3183 (Possible transcriptional regulatory protein) – TBFG_13208 (Conserved hypothetical protein) |
|
3831596–3831772 |
176 |
Intergenic region between Rv3401 (Hypothetical protein) and Rv3402c (Hypothetical protein) |
|
3853062–3860408 |
2394 |
TBFG_13461 (Hypothetical protein) – TBFG_13462 (Hypothetical protein) – TBFG_13463 (Hypothetical protein) – TBFG_134614 (Probable Transposase) – Intergenic region |
|
|
||
|
Haarlem |
||
|
|
||
|
1071617–1072976 |
1359 |
IS6110 insertion in Rv0963c (Conserved hypothetical protein) |
|
1714841–1716200 |
1359 |
IS6110 insertion in mmpl12 (Transmembrane protein) |
|
1834511–1834569 |
58 |
Rv1637c (Hypothetical protein) |
|
1973210–1973436 |
226 |
PPE24 |
|
2606037–2607396 |
1359 |
IS6110 insertion in Rv2336 (Hypothetical protein) |
|
4144939–4144997 |
58 |
leuA (2-isopropylmalate synthase) |
|
|
||
|
C |
||
|
|
||
|
4088473–4088705 |
232 |
Rv3680 (Probable anion transporter ATPase) |
|
|
||
|
Gene names are according to Tuberculist when homologous to MTB H37Rv, if not, genes are named according to the annotation of the respective genome. |
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|
Cubillos-Ruiz et al. BMC Research Notes 2008 1:110 doi:10.1186/1756-0500-1-110 |
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