Open Access Research article

The global landscape of intron retentions in lung adenocarcinoma

Qu Zhang1*, Hua Li2, Hong Jin2, Huibiao Tan2, Jun Zhang3 and Sitong Sheng245*

Author Affiliations

1 Department of Human Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA

2 HYK High-throughput Biotechnology Institute, 4/F, Building #11, Software Park, 2nd Central Keji Rd, Hi-Tech Industrial Park, Shenzhen 518060, China

3 Department of Surgery, Shanghai Institute of Digestive Surgery, Ruijin Hospital, Shanghai Jiaotong University School of Medicine, No.197 Ruijin 2nd Road, Shanghai 200025, China

4 School of Bioscience and Bioengineering, South China University of Technology, Guangzhou Higher Education Mega Center, Guangzhou 510006, China

5 College of Life Sciences, Shenzhen University, Shenzhen 518060, China

For all author emails, please log on.

BMC Medical Genomics 2014, 7:15  doi:10.1186/1755-8794-7-15

Published: 20 March 2014

Additional files

Additional file 1: Table S1:

Summary statistics for each sample.

Format: CSV Size: 1KB Download file

Open Data

Additional file 2: Table S2:

Genes with tumor-specific retentions and normal-specific retentions.

Format: CSV Size: 114KB Download file

Open Data

Additional file 3: Table S3:

Genes involved in nonsense mediated decay.

Format: CSV Size: 3KB Download file

Open Data

Additional file 4: Table S4:

Enriched gene ontology categories for genes with TSRs.

Format: CSV Size: 1KB Download file

Open Data

Additional file 5: Table S5:

Tumor-specific variants that changes the splicing signal.

Format: CSV Size: 1KB Download file

Open Data

Additional file 6: Table S6:

List of candidate tumor-specific retention genes for future functional study.

Format: CSV Size: 23KB Download file

Open Data