Table 3

Summary of the CN events were the frequency of the event was significantly different between cases and controls are listed in the table below
Chromosome region CN region CN size CN event Frequency in cases Frequency in controls 96 HNPCC/LS cases vs. 384 Controls
Nexus QuantiSNP
7q11.21 61,682,801-61,827,108 140 kb CN Gain 28% 0% p=4.93E-21 p=5.00E-06
16p11.2 32,411,929-32,504,942 82.0 kb CN Gain 46% CN Loss 23% p=3.6E-20 p<1.00E-16

Nexus protocol 5 [53] was used to compare the sample groups. No genes, microRNA or CPG islands are present in any of the CN regions listed in the table.

Talseth-Palmer et al.

Talseth-Palmer et al. BMC Medical Genomics 2013 6:10   doi:10.1186/1755-8794-6-10

Open Data