Table 2

Some information about the selected genes and SNPs
SNP (rs#) Gene Alleles (1/2)a Positionb Functionc
rs2066853 AhR G/A chr7:17345635 missense/Arg>Lys
rs713150* AhR C/G chr7:17306682 intron
rs2282885 AhR T/C chr7:17312139 intron
rs2282883 AhR G/A chr7:17322872 intron
rs2237297 AhR C/T chr7:17326119 intron
rs10994982* ARID5B A/G chr10:63380110 intron
rs10821936 ARID5B T/C chr10:63393583 intron
rs7089424 ARID5B T/G chr10:63422165 intron
rs4948502 ARID5B T/C chr10:63509423 intron
rs4948496 ARID5B T/C chr10:63475623 intron
rs4948487 ARID5B A/C chr10:63339871 intron
rs4506592 ARID5B G/A chr10:63397193 intron
rs4509706 ARID5B T/C chr10:63331346 near-gene-5
rs3817074 BAX C/T chr19:54151024 intron
rs7259013 BAX A/C chr19:54155096 intron
rs11667351 BAX T/G chr19:54147966 near-gene-5
rs12457893 BCL2A A/C chr18:59077141 intron
rs11876772 BCL2A A/G chr18:58968686 intron
rs2850761 BCL2A A/G chr18:59117377 intron
rs8092560 BCL2A T/A chr18:58954673 intron
rs4987845 BCL2A G/A chr18:58946168 untranslated-3
rs1801018 BCL2B A/G chr18:59136859 coding-synon/Thr>Thr
rs1893806 BCL2B T/G chr18:59135944 near-gene-3
rs1799988 CCR5 C/T chr3:46387263 untranslated-5
rs3087253 CCR5 T/C chr3:46393693 near-gene-3
rs11575815 CCR5 T/A chr3:46395174 unknown
rs10403561 CEBPA A/G chr19:38482342 near-gene-3
rs874966 CEBPA A/G chr19:38481237 near-gene-3
rs2239633 CEBPE C/T chr14:22658897 near-gene-5
rs8015478 CEBPE C/A chr14:22655858 near-gene-3
rs12434881 CEBPE G/A chr14:22658482 near-gene-5
rs11978267 IKZF1 A/G chr7:50433798 intron
rs4132601 IKZF1 T/G chr7:50438098 untranslated-3
rs6954833 IKZF1 A/G chr7:50425940 intron
rs10235796 IKZF1 C/T chr7:50430131 intron
rs6964969 IKZF1 A/G chr7:50440745 near-gene-3
rs11208538** JAK1 G/C chr1:65161877 intron
rs310225 JAK1 G/A chr1:65097271 intron
rs12063205 JAK1 A/G chr1:65144640 intron
rs3212713 JAK3 G/A chr19:17816001 intron
rs11888 JAK3 T/C chr19:17796626 near-gene-3
rs2229974 NOTCH1 T/C chr9:138511457 coding-synon/Asp>Asp
rs3124596 NOTCH1 A/G chr9:138521325 intron
rs3124999 NOTCH1 C/T chr9:138515294 intron
rs3124603 NOTCH1 T/C chr9:138529998 intron
rs1800566 NQO1 C/T chr16:68302646 missense/Pro>Ser
rs1469908 NQO1 A/G chr16:68321913 unknown
rs1143684 NQO2 T/C chr6:2955389 missense/Leu>Phe
rs2756075 NQO2 C/T chr6:2949532 intron
rs4149352 NQO2 C/T chr6:2947237 intron
rs2070999 NQO2 G/A chr6:2944728 near-gene-5
rs4149360* NQO2 G/A chr6:2951806 intron
rs2030171 STAT1 G/A chr2:191577408 intron
rs10208033 STAT1 T/C chr2:191587662 near-gene-5
rs3088307 STAT1 G/C chr2:191537657 untranslated-3
rs12949918 STAT3 T/C chr17:37779799 intron
rs3809758 STAT3 G/A chr17:37725506 intron
rs3816769 STAT3 T/C chr17:37751799 intron
rs17405722 STAT3 G/A chr17:37796027 near-gene-5
rs7217728 STAT5A T/C chr17:37700927 intron
rs3198502 STAT5A G/T chr17:37716520 untranslated-3
rs9906933 STAT5B G/A chr17:37663571 intron
rs4029774 STAT5B A/G chr17:37682487 near-gene-5
rs703817 STAT6 G/A chr12:55776095 untranslated-3
rs3024979 STAT6 T/A chr12:55774560 intron
rs324015 STAT6 G/A chr12:55776367 untranslated-3

*Failed genotyping, **Monomorphic, aAlleles on the forward strand; 1- major allele; 2-risk allele, bPosition according to NCBI Genome Build 36.0, cFunction according to CHIP Bioinformatics Tools http://snpper.chip.org/ webcite.

Lautner-Csorba et al.

Lautner-Csorba et al. BMC Medical Genomics 2012 5:42   doi:10.1186/1755-8794-5-42

Open Data