Network analysis identifies a putative role for the PPAR and type 1 interferon pathways in glucocorticoid actions in asthmatics
1 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto, 611-0011, Japan
2 Division of Pulmonary and Critical Care Medicine, Department of Medicine, University of California San Francisco, San Francisco, CA, USA
3 Lung Biology Center, University of California San Francisco, San Francisco, CA, USA
4 Cardiovascular Research Institute, University of California San Francisco, San Francisco, CA, USA
5 Respiratory Medicine Unit, Department of Medicine, Karolinska Institutet, Stockholm, Sweden
6 Department of Medical Biochemistry and Biophysics, Division of Physiological Chemistry II, Karolinska Institutet, Stockholm, Sweden
7 Laboratory of Bioinformatics and Genomics, World Premier International Immunology Frontier Research Center, Osaka University, Osaka, 565-0871, Japan
BMC Medical Genomics 2012, 5:27 doi:10.1186/1755-8794-5-27Published: 19 June 2012
Additional file 1:
Table S1. Stat_analysis_results.xlsx (Microsoft Excel XLSX) Lists of genes found significantly changed in the statistical analysis.
Format: XLSX Size: 201KB Download file
Additional file 2:
Table S2. Func_enrich_results.xlsx (Microsoft Excel XLSX) Results for KEGG pathways and GO terms functional enrichment analysis.
Format: XLSX Size: 131KB Download file
Additional file 3:
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Additional file 4:
Table S4. Promoter analysis.xlsx (Microsoft Excel XLSX) Results from Pscan promoter enrichment analysis with JASPAR and TRANSFAC, and results from Cscan ChIP-seq analysis.
Format: XLSX Size: 101KB Download file
Additional file 5:
Table S5. Interferon_regulated_genes.xlsx (Microsoft Excel XLSX) List of known interferon-regulated genes from the FDR set.
Format: XLSX Size: 52KB Download file