Table 4

Genes of the top-ranked GO category (time point 0 hours) identified with b) or without BC a)
GC ID P-value SYMBOL ENTREZ ID Gene name
GC01M103055_at 3.90E-05 COL11A1 1301 collagen, type XI, alpha 1
GC09P115957_at 3.73E-03 COL27A1 85301 collagen, type XXVII, alpha 1
GC0XP152413_at 3.59E-02 BGN 633 biglycan
GC01M103055_at 5.31E-25 COL11A1 1301 collagen, type XI, alpha 1
GC0XP152413_at 5.07E-12 BGN 633 biglycan
GC02P189547_at 1.39E-08 COL3A1 1281 collagen,type III, alpha 1
GC09P115957_at 2.98E-06 COL27A1 85301 collagen, type XXVII, alpha 1
GC01P031814_at 6.96E-05 TINAGL1 64129 tubulointerstitial nephritis antigen-like 1
GC07P093861_at 4.37E-04 COL1A2 1278 collagen, type I, alpha 2
GC02M189604_at 1.13E-03 COL5A2 1290 collagen, type V, alpha 2
GC17M045617_at 1.28E-02 COL1A1 1277 collagen, type I, alpha 1

Genes of the GO category (GO:0005201 extracellular matrix structural constituent) top-ranked with or without BC (see Table‚ÄČ3), including their p-value for differential expression between RA and OA. Genes represented in both data sets are highlighted in bold. Please note that both the number of genes and the p-value for differential expression considerably improve.

Kupfer et al.

Kupfer et al. BMC Medical Genomics 2012 5:23   doi:10.1186/1755-8794-5-23

Open Data