Table 4

Summary of the temporal clusters obtained from the analysis of BMP7 data.

Early

Early-intermediate

Late-intermediate

Late

Undetermined


cluster ID

genes/cluster

cluster ID

genes/cluster

cluster ID

genes/cluster

cluster ID

genes/cluster

cluster ID

genes/cluster


HCC1954

2

32

4

66

3

226

1

197

6

119

(14 clusters)

5

324

12

113

10

116

13

113

7

113

14

149

8

35

9

275

11

111

Total

890

328

342

197

232


MDA-MB-231

6

97

4

41

2

175

1

335

(16 clusters)

7

27

9

120

5

321

3

512

10

108

11

101

16

144

8

140

12

125

14

147

13

52

15

85

Total

409

494

640

987


MDA-MB-361

7

240

2

177

1

379

6

252

(12 clusters)

8

193

3

235

5

328

11

258

4

230

9

58

10

336

12

73

Total

691

978

838

252


T-47D

2

767

8

212

1

183

5

1265

14

7

(14 clusters)

3

127

9

594

10

377

6

559

4

38

12

476

7

414

11

163

13

88

Total

1597

1282

560

1824

7


ZR-75-30

3

205

2

169

11

105

14

87

1

8

(22 clusters)

5

286

4

30

12

196

7

16

13

114

6

1544

9

37

15

216

8

35

17

23

20

250

10

1493

21

14

22

36

16

147

18

85

19

336

Total

1107

3839

301

87

98


Gene clusters were classified in four temporal categories (early, early-intermediate, late-intermediate and late). Clusters with unclear profiles were classified as undetermined. The cluster ID column contains the ID number of the cluster.

Rodriguez-Martinez et al. BMC Medical Genomics 2011 4:80   doi:10.1186/1755-8794-4-80

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