Table 3

Candidate gene fusions supported by PE and junction spanning reads with PEFS >= 5

Sample

5' partner

3' partner

PEFS

In-frame?

Reference

HCC1937

NFIA

EHF

N/A

Y

[24]

SEC2

ETV6

NTRK3

5.0

Y

[18,34]

SUM149PT

MTAP

PCDH7

9.5

Y

-

HCC3153

WWC1

ADRBK2

5.0

Y

-

T50

ADNP

C20orf132

10.0

Y

-

T160

CCDC126

HSP90AA1

9.5

N

-

In addition to confirming two previously described gene fusions, we identified four novel gene fusions candidates that were selected based on our filtering criteria. Among these, three of the candidates were in-frame.

Ha et al. BMC Medical Genomics 2011 4:75   doi:10.1186/1755-8794-4-75