Table 2

Top-ranked genes associated with carcinoma stage in four ovarian and colorectal cancers

Probe Seta

Gene

Log FC


37892_at

COL11A1

3.94

217428_s_at

COL10A1

3.55

204320_at

COL11A1

3.39

210809_s_at

POSTN

3.14

206439_at

EPYC

3.12

219087_at

ASPN

2.99

205941_s_at

COL10A1

2.88

203083_at

THBS2

2.81

209955_s_at

FAP

2.73

215446_s_at

LOX

2.63

204051_s_at

SFRP4

2.53

210511_s_at

INHBA

2.52

215646_s_at

VCAN

2.50

218469_at

GREM1

2.48

209758_s_at

MFAP5

2.42

218468_s_at

GREM1

2.35

212353_at

SULF1

2.34

221730_at

COL5A2

2.34

211571_s_at

VCAN

2.33

204619_s_at

VCAN

2.33

205713_s_at

COMP

2.31

221731_x_at

VCAN

2.27

204620_s_at

VCAN

2.26

201150_s_at

TIMP3

2.25

221729_at

COL5A2

2.24

212354_at

SULF1

2.23

212489_at

COL5A1

2.22

213790_at

ADAM12

2.21

212488_at

COL5A1

2.20

201147_s_at

TIMP3

2.19

204457_s_at

GAS1

2.17

206026_s_at

TNFAIP6

2.14

202952_s_at

ADAM12

2.12

202766_s_at

FBN1

2.08

212344_at

SULF1

2.07

202311_s_at

COL1A1

2.05

209335_at

DCN

2.01


aAffymetrix probe sets

All genes have Bonferroni corrected p < 10-3 in each of the four data sets.

Kim et al. BMC Medical Genomics 2010 3:51   doi:10.1186/1755-8794-3-51

Open Data