Table 5

ncRNAs differentially expressed in stromal cells of MDS-RARS patients in comparison to healthy individuals.

Gene Locus

Name1

Locus ID

ncRNA Probe Coordinates

Probe Strand

Type

Orientation in relation to protein coding gene

q value2

Fold Change


Up-regulation in MDS-RARS

SOLH

6650

chr16:529804-529859

+

Intronic

Sense

0.000

4.40

CROCC

9696

chr1:16968607-16968658

+

Intergenic

Sense

0.038

2.40

TBCD

6904

chr17:78399392-78399451

+

Intronic

Sense

0.042

2.00


1 Gene locus name for intronic ncRNA is that of the protein-coding gene of the same locus; intergenic ncRNA is annotated with the name of the nearest protein-coding gene in that chromosome.

2 Minimum significance among all patient Leave-one-out analyses

Baratti et al. BMC Medical Genomics 2010 3:30   doi:10.1186/1755-8794-3-30

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