Table 5

Candidate SNPs within probesets were genotyped by resequencing and tested for the effect of genotype on exon array expression obtained in LCLs.

SNP

F-statistic

p-value


rs10954213

17.24

0.0001


rs10954214

22.13

0.0004


rs4728142

4.17

0.04


rs11770589

1.21

0.32


rs10488630

0.56

0.47


There was a significant effect of IRF5 SNP genotype on microarray expression of the IRF5 probeset 3023264, for 3 of the 5 SNPS tested by ANOVA.

Martin et al. BMC Medical Genomics 2009 2:62   doi:10.1186/1755-8794-2-62

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