Table 3

QPCR results of genes selected for the second verifiaction round

Gene

Selection criteria

FC Ver 1

t-test Ver 1

FC Ver 2

t-test Ver 2


ATBF1

p-value

9

1.70E-05

2.7

0.032

CACNA2D3

FC

133

0.0019

5.1

0.049

CNTNAP2

FC

287

0.0011

5.1

0.0036

DCUN1D2

FC

26

0.0027

1.0

0.46

DPYSL3

FC

23

0.01

1.6

0.19

FUSIP1

LOH

22

0.013

2.0

0.013

GNB1

PR

10

0.0028

2.3

0.007

POU4F2

PR; FC

1518

0.011

3.7

0.15

RAPGEF6

PR

37

0.0097

1.2

0.36

SLC35E2

PR

3

0.024

3.5

0.011

SLC6A2

FC

540

0.0012

2.8

0.11

TFAP2B

PR

13

0.012

4.5

0.0049


Column 2: p-value = Most significant in Ver 1 and cancer involvement, FC = Top ten with highest fold change (FC), LOH = Localized in a common Loss of Heterozygosity (LOH) region, PR = Previously Reported in NB microarray expression studies; column 3–4: Ver 1 = verification group 1; column 5–6: Ver 2 = verification group 2;

Thorell et al. BMC Medical Genomics 2009 2:53   doi:10.1186/1755-8794-2-53

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