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Open AccessResearch article

Complex nature of SNP genotype effects on gene expression in primary human leucocytes

Graham A Heap1 email, Gosia Trynka2,3* email, Ritsert C Jansen2,4* email, Marcel Bruinenberg2 email, Morris A Swertz2 email, Lotte C Dinesen5 email, Karen A Hunt1 email, Cisca Wijmenga2,3 email, David A vanHeel1 email and Lude Franke1,2,3 email

Institute of Cell and Molecular Science, Barts and The London School of Medicine and Dentistry, London, E1 2AT, UK

Genetics Department, University Medical Centre Groningen, University of Groningen, 9700 RB Groningen, the Netherlands

Complex Genetics Section, DBG-Department of Medical Genetics, University Medical Centre Utrecht, 3584 CG Utrecht, the Netherlands

Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Kerklaan 30, NL-9751 NN Haren, the Netherlands

Gastroenterology Unit, University of Oxford, Oxford OX3 7BN, UK

author email corresponding author email* Contributed equally

BMC Medical Genomics 2009, 2:1doi:10.1186/1755-8794-2-1

Published: 7 January 2009

Additional files

Additional file 1:

All detected cis-eQTLs. All detected cis-eQTLs in celiac peripheral blood and HapMap datasets 250 kb and 500 kb from the hybridization probe midpoint

Format: XLS Size: 11.6MB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 2:

Biological processes and functions for the detected cis-eQTLs. Listed are significantly over- and underrepresented biological processes and functions for the detected cis-eQTLs (FDR = 0.05, SNP-probe midpoint distance < 250 kb), derived through the Panther Classification System (Binomial test, Bonferroni corrected)

Format: XLS Size: 34KB Download file

This file can be viewed with: Microsoft Excel Viewer


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