Tiling resolution array CGH and high density expression profiling of urothelial carcinomas delineate genomic amplicons and candidate target genes specific for advanced tumors1 Department of Clinical Genetics, Lund University Hospital, SE-221 85 Lund, Sweden 2 Department of Urology, Lund University Hospital, SE-221 85 Lund, Sweden 3 Department of Pathology and Cytology, Helsingborg Hospital AB, SE-251 87 Helsingborg, Sweden 4 Department of Oncology, Lund University Hospital, SE-221 85 Lund, Sweden
BMC Medical Genomics 2008, 1:3doi:10.1186/1755-8794-1-3
Additional filesAdditional file 1: Clinical data. Data on sex, age, stage, and grade given for each patient as well as which samples were analyzed by expression profiling. Format: TIFF Size: 16.6MB Download file Additional file 2: Array-CGH data. BAC clone, genes, cytoband, start and end of BAC clone are given as well as the gene copy ratios in the individual samples. Format: DOC Size: 56KB Download file This file can be viewed with: Microsoft Word Viewer Additional file 3: Correlations between gene copy numbers and gene expression. The correlation between gene copy numbers and gene expression for genes within the 2p25, 6p22, and 8q22 amplicons. Format: TXT Size: 13MB Download file Additional file 4: ID4, E2F3, and CDKLA1 gene expression. Results from Q-PCR analyses of ID4, E2F3, and CDKLA1 gene expression. Format: XLS Size: 26KB Download file This file can be viewed with: Microsoft Excel Viewer Additional file 5: Homozygous deletions. Table of cytogenetic and Mbp positions, sizes, and included genes in the identified homozygous deletions. Format: DOC Size: 46KB Download file This file can be viewed with: Microsoft Word Viewer |




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