Table 3

Localization of the simulated QTL depending on the method/model used

Chromosome

Chr1

Chr2

Chr2

Chr3

Chr3

Chr4

Chr5

Chr5


True position

2.85

81.9

93.75

5

15

32.2

36.6

99.2

GBLUP

Zeng

2.95

83.0

4.75

28.2

no

no

BayesB

Zeng

2.85

83.0

93.7

4.75

15.8

27.9

no

no

BayesC

Dashab

2.75

83.1

93.4

4.8

14.8

28.3

35.1

no

BayesCπ

Schurink

1.6

83.1

93.4

2.9

(14.8)

(28.3)

35.1

no

BayesCπ

Zeng

2.75

83.0

93.6

4.6

16.6

no

no

no

LASSO1

Usai

2.90

81.9

95.8

4.8

16.1

28.0

35.1

no

LASSO2

Usai

2.90

81.8

94.0

4.8

16.7

34.9

36.8

no

LASSO3

Usai

2.90

81.8

95.8

4.8

15.8

28

36.8

no

MM single SNP

Dashab

3.55

82.0

no

4.8

16.5

no

36.2

no

MM Haplotype

Dashab

2.5

no

96.0

4.8

14.9

no

35.9

no

MM Phylogeny

Dashab

2.7

82.3

95.8

4.8

11.1

31.7

36

no

EMMAX

Fu

2.9

83.1

no

4.8

no

no

no

no


Demeure et al. BMC Proceedings 2012 6(Suppl 2):S2   doi:10.1186/1753-6561-6-S2-S2

Open Data