Table 2

Comparison of QTL mapping results

Method

Authors

QTL detected

False positives

Missing QTL (a)

Mean distance to the QTL (cM)


GBLUP

Zeng

5

0

3,5,8

1.32

BayesB

Zeng

6

3

7,8

1.21

BayesC

Dashab

7

2

8

0.96

BayesCĎ€

Schurink

5

0

5,6,8

0.83

Zeng

5

1

6,7,8

0.45

LASSO1

Usai

7

Numerous

6

0.83

LASSO2

Usai

7

Numerous

6

0.74

LASSO3

Usai

7

Numerous

6

0.29

MM single SNP

Dashab

5

3

3,6,8

0.73

MM Haplotype

Dashab

5

6

2,6,8

0.61

MM Phylogeny

Dashab

7

5

8

1.07

EMMAX

Fu

3

1

3,5,6,7,8

0.43


(a) 2: Chr2, 81,9cM; 3: Chr2, 93,75cM; 5: Chr3, 15cM; 6: Chr4, 32,2cM; 7: Chr5, 36,3cM; 8:Chr5, 99,2cM.

Demeure et al. BMC Proceedings 2012 6(Suppl 2):S2   doi:10.1186/1753-6561-6-S2-S2

Open Data