Table 3

Ten most frequent genes in significant PharmGKB pathways and GO processes using the weighted approach

PharmGKB

Number of nonsynonomous SNPs

GO

Number of nonsynonomous SNPs


VEGFA

2

FLT1

20

FLT1

20

KDR

11

SRC

1

VEGFA

2

HSP90AA1

9

KIT

5

KDR

11

ARNT

9

PRKCA

2

PTK2B

4

HIF1A

6

HIF1A

6

PTK2

5

SHH

4

SHC1

3

ROR2

2

ARNT

9

NRP1

1


Bold denotes genes that were found using both databases.

Xing et al. BMC Proceedings 2011 5(Suppl 9):S6   doi:10.1186/1753-6561-5-S9-S6

Open Data