Table 1

Evaluation of predicted breeding values (EBV) at point 600 for the animals without phenotypic data

BLUP

SNP1

SNP2

SNP3

IBS2

IBS5 IBD

14 SNP


BLUP

1

SNP1

0.71

1

SNP2

0.76

0.93

1

SNP3

0.75

0.93

1

1

IBS2

0.74

0.93

0.99

0.99

1

IBS5

0.75

0.94

0.99

0.99

0.99

1

IBD

0.75

0.95

0.98

0.98

0.98

0.98 1

14 SNP

0.72

0.93

0.99

0.99

0.99

0.98 0.97

1


Association EBV with true breeding value


Variance EBV

10.8

25.0

18.0

17.9

18.3

19.6 19.0

20.2

Accuracy

0.65

0.91

0.93

0.93

0.93

0.93 0.93

0.93

Mean sq. error

14.7

4.4

3.8

3.7

3.5

3.5 3.5

3.5

Regression

coefficient

0.99

0.92

1.10

1.10

1.10

1.06 1.08

1.04


Correlations between breeding values predicted using the additive genetic relationship matrix (BLUP), and haplotype defined as single SNP (effects sampled from 1, 2 or 3 distributions), IBD haplotypes, and IBS haplotypes (combing 2 or 5 SNP), and association with simulated true breeding value.

Veerkamp et al. BMC Proceedings 2010 4(Suppl 1):S9   doi:10.1186/1753-6561-4-S1-S9

Open Data