Table 1

Number of significant markers identified by the simultaneous analysis and markers with extreme effect sizes

Chromosome number

Number of SNPs

Number of significant SNPs

Markers with largest risk and protective effects


Largest risk effect

Largest protective effect



Marker

Effect size

Marker

Effect size


1

40929

142

rs7519615

1.73638

rs2275864

-1.41482

2

44090

140

rs655783

0.91779

rs938869

-2.3145

3

36690

138

rs7616866

202.447

rs9288967

-4.23478

4

32628

133

rs768063

155.04

rs6816684

-2.31044

5

33612

90

rs344156

1.46745

rs6899062

-1.68164

6

35574

82

rs6935937

3.06767

rs1856363

-2.18496

7

29244

130

rs9632680

96.105

rs4732523

-2.41344

8

30990

130

rs7006628

0.577914

rs2853259

-1.50527

9

26128

125

rs6478815

154.845

rs1387292

-3.12822

10

28331

131

rs2388121

0.777184

rs1909668

-1.36459

11

26477

119

rs1879445

123.081

rs7932437

-6.04313

12

26365

129

rs1146114

1.43868

rs7300982

-1.59685

13

20242

129

rs2323883

4.76091

rs9740397

-3.53682

14

17951

124

rs4296166

1.53678

rs4983565

-2.02512

15

16166

121

rs7183817

0.814795

rs3743372

-2.60765

16

16460

111

rs4238802

0.66247

rs4783187

-1.98159

17

14027

123

rs2880328

92.8919

rs9747823

-1.31507

18

16450

123

rs2303508

78.2526

rs1982040

-2.32656

19

9236

101

rs3810256

1.11899

rs10404348

-3.04764

20

13843

114

rs6513195

3.13637

rs6138601

-4.63256

21

8051

102

rs2823819

0.971309

rs1539902

-1.08918

22

8205

90

rs761917

1.46745

rs17406434

-1.68164


Total

531689

2627


Mathew et al. BMC Proceedings 2009 3(Suppl 7):S11  

Open Data