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This article is part of the supplement: EADGENE and SABRE Post-analyses Workshop

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Methods for interpreting lists of affected genes obtained in a DNA microarray experiment

Jakob Hedegaard*, Cristina Arce†, Silvio Bicciato†, Agnès Bonnet†, Bart Buitenhuis†, Melania Collado-Romero†, Lene N Conley†, Magali SanCristobal†, Francesco Ferrari†, Juan J Garrido†, Martien AM Groenen†, Henrik Hornshøj†, Ina Hulsegge†, Li Jiang†, Ángeles Jiménez-Marín†, Arun Kommadath†, Sandrine Lagarrigue†, Jack AM Leunissen†, Laurence Liaubet†, Pieter BT Neerincx†, Haisheng Nie†, Jan Poel†, Dennis Prickett†, María Ramirez-Boo†, Johanna MJ Rebel†, Christèle Robert-Granié†, Axel Skarman†, Mari A Smits†, Peter Sørensen†, Gwenola Tosser-Klopp† and Michael Watson†

BMC Proceedings 2009, 3(Suppl 4):S5 doi:

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Using microarrays to identify positional candidate genes for QTL: the case study of ACTH response in pigs

Vincent Jouffe, Suzanne Rowe, Laurence Liaubet, Bart Buitenhuis, Henrik Hornshøj, Magali SanCristobal, Pierre Mormède, DJ de Koning BMC Proceedings 2009, 3(Suppl 4):S14 (16 July 2009)

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Pathway results from the chicken data set using GOTM, Pathway Studio and Ingenuity softwares

Agnès Bonnet, Sandrine Lagarrigue, Laurence Liaubet, Christèle Robert-Granié, Magali SanCristobal, Gwenola Tosser-Klopp BMC Proceedings 2009, 3(Suppl 4):S11 (16 July 2009)

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Microarray data mining using Bioconductor packages

Haisheng Nie, Pieter BT Neerincx, Jan Poel, Francesco Ferrari, Silvio Bicciato, Jack AM Leunissen, Martien AM Groenen BMC Proceedings 2009, 3(Suppl 4):S9 (16 July 2009)

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Gene set analysis methods applied to chicken microarray expression data

Axel Skarman, Li Jiang, Henrik Hornshøj, Bart Buitenhuis, Jakob Hedegaard, Lene N Conley, Peter Sørensen BMC Proceedings 2009, 3(Suppl 4):S8 (16 July 2009)

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Use of GenMAPP and MAPPFinder to analyse pathways involved in chickens infected with the protozoan parasite Eimeria

Dennis Prickett, Michael Watson BMC Proceedings 2009, 3(Suppl 4):S7 (16 July 2009)

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Biological pathway analysis by ArrayUnlock and Ingenuity Pathway Analysis

Ángeles Jiménez-Marín, Melania Collado-Romero, María Ramirez-Boo, Cristina Arce, Juan J Garrido BMC Proceedings 2009, 3(Suppl 4):S6 (16 July 2009)

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Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis

Pieter BT Neerincx, Pierrot Casel, Dennis Prickett, Haisheng Nie, Michael Watson, Jack AM Leunissen, Martien AM Groenen, Christophe Klopp BMC Proceedings 2009, 3(Suppl 4):S1 (16 July 2009)

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The EADGENE and SABRE post-analyses workshop

Florence Jaffrezic, Jakob Hedegaard, Magali SanCristobal, Christophe Klopp, Dirk-Jan de Koning BMC Proceedings 2009, 3(Suppl 4):I1 (16 July 2009)

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