Table 2 |
|||||
|
Running time and error rates of PedPhase on chromosome 6 |
|||||
|
Error rate |
|||||
|
|
|||||
|
Individuals |
Missing |
Running time (sec) |
Genotype inference |
Heterozygous switch |
Point-wise |
|
|
|||||
|
100 |
0.00 |
10 |
------a |
0.0061 |
0.0011 |
|
100 |
0.05 |
11 |
0.1165 |
0.0215 |
0.0088 |
|
100 |
0.10 |
15 |
0.1439 |
0.0412 |
0.0190 |
|
100 |
0.15 |
16 |
0.1731 |
0.560 |
0.0279 |
|
200 |
0.00 |
24 |
------ |
0.0058 |
0.0022 |
|
200 |
0.05 |
25 |
0.1223 |
0.0231 |
0.0099 |
|
200 |
0.10 |
27 |
0.1291 |
0.0398 |
0.0181 |
|
200 |
0.15 |
35 |
0.1513 |
0.0517 |
0.0256 |
|
400 |
0.00 |
51 |
------ |
0.0056 |
0.0015 |
|
400 |
0.05 |
55 |
0.1240 |
0.0232 |
0.0094 |
|
400 |
0.10 |
61 |
0.1418 |
0.0353 |
0.0179 |
|
400 |
0.15 |
66 |
0.1628 |
0.0459 |
0.0238 |
|
|
|||||
|
a------, Inference error rate is not measured because no missingness exists in this row. |
|||||
|
Li and Li BMC Proceedings 2007 1(Suppl 1):S55 |
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