Table 2

Type I error rates and power (in percentage)for testing linkage or association (T3)

LD group (number of SNPs)


Significance level (%)

r2 = 0, θ = 0.5 (n = 6597)

0 <r2 <= 0.01 (n = 1751)

0.01 <r2 <= 0.1 (n = 304)

0.1 <r2 <= 0.3 (n = 29)

0.3 <r2 <= 0.92 (n = 18)


FBAT

5

5

34.8

92.1

100

100

1

1

23.7

88.4

100

100

0.1

0.1

15

82.6

100

100

Millstein-a

5

5

99.2

100

100

100

1

1

98.2

100

100

100

0.1

0.1

96.3

99.9

100

100


Chen et al. BMC Proceedings 2007 1(Suppl 1):S38  

Open Data