Table 1

Number of heritable genes identified after using there different normalization methods


RMA
dChip
MAS 5.0

No. selected genes for analysis
1737
1764
1785
No. heritable genes with FDR ≤ 0.05
994
791
696
No. heritable genes with FDR ≤ 0.01
757
584
520
Average no. false positives after permutation with p-value ≤ 0.05 (standard deviation)
24.4 (4.5)
43.8 (5.4)
39.1 (6.5)

Ma and Qin BMC Proceedings 2007 1(Suppl 1):S154